Sol Genomics Network

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SGN Marker C2_At1g16210

SGN-M6626
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	301919 (SGN) 123394 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U196844	-	-	-
Lycopersicon Combined	Single	SGN-U223909	-	-	-
Solanum tuberosum	Multiple	SGN-U247591	-	-	-
Arabidopsis	Single	At1g16210 on TAIR	-	-	-

Mapped locations

Map: Tomato-EXPEN 2000
Map version 52 (location: 38107)
Chromosome 1
Position 165.00 cM
Confidence I(LOD2)
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39398

Forward primer (5'-3')

AGGAAGGAGGCGGAGCAGGC

Accessions and product sizes

Solanum pennellii TA56

400

Solanum lycopersicum TA209

400

Approximate temperature

55°C

Reverse primer (5'-3')

TCCTTCAGAGCACGAAGCTCAGC

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

250

Solanum pennellii TA56

200

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25028)
Chromosome 1
Position 5.55 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10046
Forward primer (5'-3') AGGAAGGAGGCGGAGCAGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTCAGAGCACGAAGCTCAGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 400	Approximate temperature 55°C

PCR data Exp. ID 10047
Forward primer (5'-3') AGGAAGGAGGCGGAGCAGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTCAGAGCACGAAGCTCAGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 400	Approximate temperature 55°C

PCR data Exp. ID 10048
Forward primer (5'-3') AGGAAGGAGGCGGAGCAGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTCAGAGCACGAAGCTCAGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 400	Approximate temperature 55°C

PCR data Exp. ID 12162
Forward primer (5'-3') AAAGCCGAGACGTCTAGGGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAGAGGATTATCTGGAGATTTCTTCC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 720	Approximate temperature 55°C

PCR data Exp. ID 12163
Forward primer (5'-3') AAAGCCGAGACGTCTAGGGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAGAGGATTATCTGGAGATTTCTTCC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 720	Approximate temperature 55°C

PCR data Exp. ID 12164
Forward primer (5'-3') AAAGCCGAGACGTCTAGGGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAGAGGATTATCTGGAGATTTCTTCC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 1000	Approximate temperature 55°C

PCR data Exp. ID 12165
Forward primer (5'-3') AAAGCCGAGACGTCTAGGGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAGAGGATTATCTGGAGATTTCTTCC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 720	Approximate temperature 55°C

PCR data Exp. ID 12166
Forward primer (5'-3') AAAGCCGAGACGTCTAGGGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAGAGGATTATCTGGAGATTTCTTCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 1300+750	Approximate temperature 55°C

PCR data Exp. ID 12167
Forward primer (5'-3') AAAGCCGAGACGTCTAGGGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAGAGGATTATCTGGAGATTTCTTCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 1300+750	Approximate temperature 55°C

PCR data Exp. ID 12168
Forward primer (5'-3') AAAGCCGAGACGTCTAGGGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAGAGGATTATCTGGAGATTTCTTCC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12169
Forward primer (5'-3') AAAGCCGAGACGTCTAGGGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAGAGGATTATCTGGAGATTTCTTCC	Enzymes
Accessions and product sizes Physalis TA1367: 1000	Approximate temperature 55°C

PCR data Exp. ID 12170
Forward primer (5'-3') AAAGCCGAGACGTCTAGGGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAGAGGATTATCTGGAGATTTCTTCC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 750	Approximate temperature 55°C

PCR data Exp. ID 12171
Forward primer (5'-3') AAAGCCGAGACGTCTAGGGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAGAGGATTATCTGGAGATTTCTTCC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 1300	Approximate temperature 55°C

PCR data Exp. ID 12459
Forward primer (5'-3') AGGAAGGAGGCGGAGCAGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTCAGAGCACGAAGCTCAGC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 400	Approximate temperature 55°C

PCR data Exp. ID 12460
Forward primer (5'-3') AGGAAGGAGGCGGAGCAGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTCAGAGCACGAAGCTCAGC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 400+900	Approximate temperature 55°C

PCR data Exp. ID 12461
Forward primer (5'-3') AGGAAGGAGGCGGAGCAGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTCAGAGCACGAAGCTCAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 480	Approximate temperature 55°C

PCR data Exp. ID 12462
Forward primer (5'-3') AGGAAGGAGGCGGAGCAGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTCAGAGCACGAAGCTCAGC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 480	Approximate temperature 55°C

PCR data Exp. ID 12463
Forward primer (5'-3') AGGAAGGAGGCGGAGCAGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTCAGAGCACGAAGCTCAGC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 900	Approximate temperature 55°C

PCR data Exp. ID 12464
Forward primer (5'-3') AGGAAGGAGGCGGAGCAGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTCAGAGCACGAAGCTCAGC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 500	Approximate temperature 55°C

PCR data Exp. ID 12465
Forward primer (5'-3') AGGAAGGAGGCGGAGCAGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTCAGAGCACGAAGCTCAGC	Enzymes
Accessions and product sizes Physalis TA1367: 600	Approximate temperature 55°C

PCR data Exp. ID 12466
Forward primer (5'-3') AGGAAGGAGGCGGAGCAGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTCAGAGCACGAAGCTCAGC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 400	Approximate temperature 55°C

PCR data Exp. ID 12467
Forward primer (5'-3') AGGAAGGAGGCGGAGCAGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTCAGAGCACGAAGCTCAGC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 400+900	Approximate temperature 55°C

PCR data Exp. ID 32708
Forward primer (5'-3') AGGAAGGAGGCGGAGCAGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTCAGAGCACGAAGCTCAGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 480	Approximate temperature 55°C

PCR data Exp. ID 32709
Forward primer (5'-3') AGGAAGGAGGCGGAGCAGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTCAGAGCACGAAGCTCAGC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 480	Approximate temperature 55°C

PCR data Exp. ID 32710
Forward primer (5'-3') AGGAAGGAGGCGGAGCAGGC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTTCAGAGCACGAAGCTCAGC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 900	Approximate temperature 55°C

PCR data Exp. ID 33307
Forward primer (5'-3') AAAGCCGAGACGTCTAGGGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAGAGGATTATCTGGAGATTTCTTCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 1300+750	Approximate temperature 55°C

PCR data Exp. ID 33308
Forward primer (5'-3') AAAGCCGAGACGTCTAGGGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAGAGGATTATCTGGAGATTTCTTCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 1300+750	Approximate temperature 55°C

PCR data Exp. ID 33309
Forward primer (5'-3') AAAGCCGAGACGTCTAGGGCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TAAGAGGATTATCTGGAGATTTCTTCC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: Multiple	Approximate temperature 55°C