SGN Marker C2_At1g16570

SGN-M6631
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle302005 (SGN)
123885 (CGN)		---
Lycopersicon CombinedSingleSGN-U226835---
Solanum tuberosumSingleSGN-U258783---
ArabidopsisSingleAt1g16570 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25033)
Chromosome
1
Position
5.67 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41039
Forward primer (5'-3')
AATGAAATCAAGGGTGGGAAGC
Accessions and product sizes
Solanum pennellii TA56
225
Solanum lycopersicum TA209
225
Approximate temperature
55°C
Reverse primer (5'-3')
TGGCTCTAACCACATAGTACGAAATGC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
225
Solanum pennellii TA56
175
Mg+2 concentration
1.5mM
   Enzymes
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At1g16570  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6631 marker 6631
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