SGN Marker C2_At1g20770

SGN-M6671
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle306609 (SGN)
132094 (CGN)		---
Capsicum annuumSingleSGN-U202469---
Lycopersicon CombinedSingleSGN-U235951---
ArabidopsisSingleAt1g20770 on TAIR---
Mapped locations  
Map: Pepper-COSII   
Map version
58 (location: 41312)
Chromosome
2
Position
123.40 cM
Confidence
I(LOD2)
Protocol
dCAPS


Pepper-COSII

PCR data   Exp. ID 43288
Forward primer (5'-3')
ATCCATGGAAGAGTTCTAATGCTTAAAT
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
GCCCACTTACACAAGCTGAAATGCG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38126)
Chromosome
2
Position
99.50 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39414
Forward primer (5'-3')
AGCTGGCGAGTGCTAGGCATTCC
Accessions and product sizes
Solanum lycopersicum TA209
1700
Solanum pennellii TA56
1700
Approximate temperature
58°C
Reverse primer (5'-3')
GCCCACTTACACAAGCTGAAATGCG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
1650
Solanum lycopersicum TA209
1700
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25075)
Chromosome
1
Position
7.22 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At1g20770  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6671 marker 6671
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