SGN Marker C2_At1g21640

SGN-M6676
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle309450 (SGN)
128171 (CGN)		---
Lycopersicon CombinedSingleSGN-U223676---
Solanum tuberosumSingleSGN-U253456---
ArabidopsisSingleAt1g21640 on TAIR---
Mapped locations  
Map: Eggplant-COSII   
Map version
63 (location: 42173)
Chromosome
6
Position
52.90 cM
Confidence
F(LOD3)
Protocol
dCAPS


Eggplant-COSII

PCR data   Exp. ID 43736
Forward primer (5'-3')
GGCATCAAAAGCAGCAGTTTTAGAAG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
TGCAGAATCTGGAAGTATGACAGG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38128)
Chromosome
6
Position
37.00 cM
Confidence
I(LOD2)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39416
Forward primer (5'-3')
AGAAAAGTCATCCATGGAAACAACAC
Accessions and product sizes
Solanum pennellii TA56
450
Solanum lycopersicum TA209
450
Approximate temperature
55°C
Reverse primer (5'-3')
TGGCCACAATGACACCATCACCTTG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
275
Solanum lycopersicum TA209
350
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25080)
Chromosome
1
Position
7.59 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At1g21640  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6676 marker 6676
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)