SGN Marker C2_At1g21780

SGN-M6681
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeMultiple299305 (SGN)
121773 (CGN)		---
Capsicum annuumSingleSGN-U203837---
Lycopersicon CombinedSingleSGN-U222150---
Solanum tuberosumSingleSGN-U245217---
ArabidopsisSingleAt1g21780 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25085)
Chromosome
1
Position
7.65 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41051
Forward primer (5'-3')
AGCATCTACTTACAAAAGATCTGACCC
Accessions and product sizes
Solanum pennellii TA56
800
Solanum lycopersicum TA209
800
Approximate temperature
55°C
Reverse primer (5'-3')
TTCGAAAGCCGAGAAGGTTCAGG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10077
Forward primer (5'-3')
AGCATCTACTTACAAAAGATCTGACCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCGAAAGCCGAGAAGGTTCAGG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 200
 Approximate temperature
53°C
  
PCR data   Exp. ID 10078
Forward primer (5'-3')
AGCATCTACTTACAAAAGATCTGACCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCGAAAGCCGAGAAGGTTCAGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 200
 Approximate temperature
53°C
  
PCR data   Exp. ID 10079
Forward primer (5'-3')
AGCATCTACTTACAAAAGATCTGACCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCGAAAGCCGAGAAGGTTCAGG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 200
 Approximate temperature
53°C
  
Unigene blast matches for primers 
SGN-U222150
SGN-U271262
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At1g21780  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6681 marker 6681
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