Sol Genomics Network

SGN Marker C2_At1g23890

SGN-M6693
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Capsicum annuum	Single	SGN-U204136	-	-	-
Lycopersicon Combined	Single	SGN-U219209	-	-	-
Solanum tuberosum	Single	SGN-U251497	-	-	-
Arabidopsis	Single	At1g23890 on TAIR	-	-	-

Mapped locations

Map: Eggplant-COSII
Map version 63 (location: 42174)
Chromosome 3
Position 58.60 cM
Confidence F(LOD3)
Protocol CAPS

Eggplant-COSII

PCR data Exp. ID 43737

Forward primer (5'-3')

ACCCTTACTCCATCATCCCTGTATCT

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

TGACTTGCTAATCTTTCTAATTGCAT

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Pepper-COSII
Map version 58 (location: 41314)
Chromosome 11
Position 57.10 cM
Confidence I
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43290

Forward primer (5'-3')

ATGCATGCAATTAGAAAGATTAGCAAG

Accessions and product sizes

Approximate temperature

64°C

Reverse primer (5'-3')

AATCCAGGTCCATCAGCACGGC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38132)
Chromosome 5
Position 7.50 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39420

Forward primer (5'-3')

ATGCATGCAATTAGAAAGATTAGCAAG

Accessions and product sizes

Solanum lycopersicum TA209

200

Solanum pennellii TA56

200

Approximate temperature

53°C

Reverse primer (5'-3')

AATCCAGGTCCATCAGCACGGC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25098)
Chromosome 1
Position 8.44 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10090
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1850	Approximate temperature 55°C

PCR data Exp. ID 10091
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1850	Approximate temperature 55°C

PCR data Exp. ID 10092
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1850	Approximate temperature 55°C

PCR data Exp. ID 12524
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 1850	Approximate temperature 55°C

PCR data Exp. ID 12525
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 1850	Approximate temperature 55°C

PCR data Exp. ID 12526
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12527
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12528
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12529
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12530
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12531
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Physalis TA1367: 2000	Approximate temperature 55°C

PCR data Exp. ID 12532
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 800	Approximate temperature 55°C

PCR data Exp. ID 12533
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 920	Approximate temperature 55°C

PCR data Exp. ID 12534
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 800	Approximate temperature 55°C

PCR data Exp. ID 12535
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 800	Approximate temperature 55°C

PCR data Exp. ID 32733
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: Multiple	Approximate temperature 55°C

PCR data Exp. ID 32734
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: Multiple	Approximate temperature 55°C

PCR data Exp. ID 32735
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: Multiple	Approximate temperature 55°C

PCR data Exp. ID 32736
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: Multiple	Approximate temperature 55°C

PCR data Exp. ID 10093
Forward primer (5'-3') ATGCATGCAATTAGAAAGATTAGCAAG	Digested band sizes (using DpnII) Solanum lycopersicum LA925: 900 Solanum pennellii LA716: 750	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCCAGGTCCATCAGCACGGC	Enzymes All possible enzymes for pennellii and and lycopersicum: DpnII
Accessions and product sizes Solanum pennellii LA716: 1850 Solanum lycopersicum LA925: 1850	Approximate temperature 55°C