SGN Marker C2_At1g31812

SGN-M6767
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeMultiple299362 (SGN)
124159 (CGN)		---
Capsicum annuumSingleSGN-U198090---
Lycopersicon CombinedSingleSGN-U214537---
Solanum tuberosumMultipleSGN-U260521---
ArabidopsisSingleAt1g31812 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25173)
Chromosome
1
Position
11.41 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41078
Forward primer (5'-3')
AGCAAAGTGGGATGCATGGAAGG
Accessions and product sizes
Solanum lycopersicum TA209
1700
Solanum pennellii TA56
1700
Approximate temperature
55°C
Reverse primer (5'-3')
TTCCAGCAACTGTTTCACCTTGG
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
1500
Solanum pennellii TA56
1650
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10159
Forward primer (5'-3')
AGCAAAGTGGGATGCATGGAAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCCAGCAACTGTTTCACCTTGG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 150
 Approximate temperature
55°C
  
PCR data   Exp. ID 10160
Forward primer (5'-3')
AGCAAAGTGGGATGCATGGAAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCCAGCAACTGTTTCACCTTGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 150
 Approximate temperature
55°C
  
PCR data   Exp. ID 10161
Forward primer (5'-3')
AGCAAAGTGGGATGCATGGAAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTCCAGCAACTGTTTCACCTTGG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 150
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U214537
SGN-U269820
SGN-U269821
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At1g31812  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6767 marker 6767
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