Sol Genomics Network

SGN Marker C2_At1g31970

SGN-M6771
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	302024 (SGN) 122537 (CGN)	-	-	-
Lycopersicon Combined	Single	SGN-U221029	-	-	-
Solanum tuberosum	Multiple	SGN-U250973	-	-	-
Arabidopsis	Single	At1g31970 on TAIR	-	-	-

Mapped locations

Map: Arabidopsis COSII
Map version 44 (location: 25177)
Chromosome 1
Position 11.48 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

PCR data Exp. ID 41080

Forward primer (5'-3')

TTATTGGAACCCCTGGTCGTTTG

Accessions and product sizes

Solanum pennellii TA56

1000

Solanum lycopersicum TA209

1000

Approximate temperature

50°C

Reverse primer (5'-3')

ATCAAGCATGCGATCAGCTTCATC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Other PCR data

PCR data Exp. ID 10165
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1000	Approximate temperature 50°C

PCR data Exp. ID 10166
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1000	Approximate temperature 50°C

PCR data Exp. ID 10167
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1000	Approximate temperature 50°C

PCR data Exp. ID 12575
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 950	Approximate temperature 55°C

PCR data Exp. ID 12576
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 950	Approximate temperature 55°C

PCR data Exp. ID 12577
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 600	Approximate temperature 55°C

PCR data Exp. ID 12578
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 600	Approximate temperature 55°C

PCR data Exp. ID 12579
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 600	Approximate temperature 55°C

PCR data Exp. ID 12580
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 600	Approximate temperature 55°C

PCR data Exp. ID 12581
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Physalis TA1367: 950	Approximate temperature 55°C

PCR data Exp. ID 12582
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 950	Approximate temperature 55°C

PCR data Exp. ID 12583
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 950	Approximate temperature 55°C

PCR data Exp. ID 12584
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 950	Approximate temperature 55°C

PCR data Exp. ID 32597
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 950	Approximate temperature 55°C

PCR data Exp. ID 32749
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 950	Approximate temperature 55°C

PCR data Exp. ID 32750
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 950	Approximate temperature 55°C

PCR data Exp. ID 32751
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 600	Approximate temperature 55°C

PCR data Exp. ID 32752
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 600	Approximate temperature 55°C

PCR data Exp. ID 32753
Forward primer (5'-3') TTATTGGAACCCCTGGTCGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATCAAGCATGCGATCAGCTTCATC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 600	Approximate temperature 55°C

Unigene blast matches for primers

SGN-U221029

Universal primers for Asterid species

No additional PCR data found.

Related Markers

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of C2_At1g31970

%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6771 marker 6771

User comments

Please wait, checking for comments. (If comments do not show up, access them here)

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

SGN is supported by , and hosted at
Cite SGN using | Disclaimer