SGN Marker C2_At1g32130

SGN-M6774
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle300620 (SGN)
121343 (CGN)
---
Capsicum annuumSingleSGN-U200846---
Lycopersicon CombinedSingleSGN-U215072---
Solanum tuberosumSingleSGN-U244648---
ArabidopsisSingleAt1g32130 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25180)
Chromosome
1
Position
11.56 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41081
Forward primer (5'-3')
AATAAAGCATCAGGAATGGAATCC
Accessions and product sizes
Solanum lycopersicum TA209
300+1000
Solanum pennellii TA56
300+1000
Approximate temperature
50°C
Reverse primer (5'-3')
TTGCTCTAGCCCTGGCCCTAAC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10172
Forward primer (5'-3')
AATAAAGCATCAGGAATGGAATCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGCTCTAGCCCTGGCCCTAAC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 300+1000
Approximate temperature
50°C
  
PCR data   Exp. ID 10173
Forward primer (5'-3')
AATAAAGCATCAGGAATGGAATCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGCTCTAGCCCTGGCCCTAAC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 300+1000
Approximate temperature
50°C
  
PCR data   Exp. ID 10174
Forward primer (5'-3')
AATAAAGCATCAGGAATGGAATCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGCTCTAGCCCTGGCCCTAAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 300+1000
Approximate temperature
50°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At1g32130  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6774 marker 6774
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