SGN Marker C2_At1g32500

SGN-M6780
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle302272 (SGN)
123728 (CGN)
---
Solanum tuberosumSingleSGN-U254385---
ArabidopsisSingleAt1g32500 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25186)
Chromosome
1
Position
11.75 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41084
Forward primer (5'-3')
ACAGTAAATTAGTCCTAGATCATCCACG
Accessions and product sizes
Solanum lycopersicum TA209
220
Solanum pennellii TA56
220
Approximate temperature
55°C
Reverse primer (5'-3')
TGCCCTGAAGTAAAACAGTTGGTCCTC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
220
Solanum pennellii TA56
160
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10175
Forward primer (5'-3')
ACAGTAAATTAGTCCTAGATCATCCACG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCCCTGAAGTAAAACAGTTGGTCCTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 700+1350
Approximate temperature
55°C
  
PCR data   Exp. ID 10176
Forward primer (5'-3')
ACAGTAAATTAGTCCTAGATCATCCACG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCCCTGAAGTAAAACAGTTGGTCCTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1350
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At1g32500  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6780 marker 6780
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