SGN Marker C2_At1g43860

SGN-M6803
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle304431 (SGN)
124865 (CGN)		---
Lycopersicon CombinedSingleSGN-U225655---
ArabidopsisSingleAt1g43860 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25209)
Chromosome
1
Position
16.63 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41089
Forward primer (5'-3')
ATGGTAACCGTTTCGAAATCGC
Accessions and product sizes
Solanum lycopersicum TA209
150
Solanum pennellii TA56
150
Approximate temperature
55°C
Reverse primer (5'-3')
TGGTTTGATCATCAGTTCCAAAAGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10194
Forward primer (5'-3')
ATGGTAACCGTTTCGAAATCGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGTTTGATCATCAGTTCCAAAAGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 350
 Approximate temperature
55°C
  
PCR data   Exp. ID 10195
Forward primer (5'-3')
ATGGTAACCGTTTCGAAATCGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGTTTGATCATCAGTTCCAAAAGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 350
 Approximate temperature
55°C
  
PCR data   Exp. ID 10196
Forward primer (5'-3')
ATGGTAACCGTTTCGAAATCGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGGTTTGATCATCAGTTCCAAAAGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 350
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U225655
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At1g43860F.cds.txt, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Amplicon sequence alignment, FASTA
At1g43860F.cds.txt, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At1g43860  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6803 marker 6803
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