SGN Marker C2_At1g45976

SGN-M6813
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle301359 (SGN)
122711 (CGN)		---
Capsicum annuumSingleSGN-U199434---
Lycopersicon CombinedMultipleSGN-U215320---
Solanum tuberosumSingleSGN-U252562---
ArabidopsisSingleAt1g45976 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25221)
Chromosome
1
Position
17.20 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41093
Forward primer (5'-3')
TCCTGAACAGTCTCAACACCCTCC
Accessions and product sizes
Solanum lycopersicum TA209
450
Solanum pennellii TA56
450
Approximate temperature
55°C
Reverse primer (5'-3')
ATTCTCGCTCAATATCATCACCCAC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10215
Forward primer (5'-3')
TCCTGAACAGTCTCAACACCCTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATTCTCGCTCAATATCATCACCCAC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 450
 Approximate temperature
55°C
  
PCR data   Exp. ID 10216
Forward primer (5'-3')
TCCTGAACAGTCTCAACACCCTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATTCTCGCTCAATATCATCACCCAC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 450
 Approximate temperature
55°C
  
PCR data   Exp. ID 10217
Forward primer (5'-3')
TCCTGAACAGTCTCAACACCCTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATTCTCGCTCAATATCATCACCCAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 450
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U215320
SGN-U277460
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At1g45976  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6813 marker 6813
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