Sol Genomics Network

SGN Marker C2_At1g47830

SGN-M6816
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Capsicum annuum	Single	SGN-U201572	-	-	-
Lycopersicon Combined	Single	SGN-U221287	-	-	-
Solanum tuberosum	Single	SGN-U251046	-	-	-
Arabidopsis	Single	At1g47830 on TAIR	-	-	-

Mapped locations

Map: Tomato - Kazusa and SolCAP markers mapped to genome
Map version 105 (location: 49212)
Chromosome 4
Position 62.99 MB
Confidence uncalculated
Protocol CAPS

Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map
Map version 103 (location: 47143)
Chromosome 4
Position 120.30 cM
Confidence uncalculated
Protocol unknown

Kazusa F2-2000 genetic map

Map: Eggplant-COSII
Map version 63 (location: 42183)
Chromosome 4
Position 117.00 cM
Confidence F(LOD3)
Protocol dCAPS

Eggplant-COSII

PCR data Exp. ID 43747

Forward primer (5'-3')

TTGTGAATAGAGATCCCAAATTCACC

Accessions and product sizes

Approximate temperature

53°C

Reverse primer (5'-3')

ATAACAATTTCATACTCATCCATAACG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38184)
Chromosome 4
Position 129.50 cM
Confidence CF(LOD3)
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39465

Forward primer (5'-3')

TTGTGAATAGAGATCCCAAATTCACC

Accessions and product sizes

Solanum pennellii TA56

900

Solanum lycopersicum TA209

1000

Approximate temperature

55°C

Reverse primer (5'-3')

TCCTGCATATCTTCTGTATATTACCTTG

Digested band sizes (using amplicon difference)

Solanum pennellii TA56

900

Solanum lycopersicum TA209

1000

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25224)
Chromosome 1
Position 17.62 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10221
Forward primer (5'-3') TTGTGAATAGAGATCCCAAATTCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTGCATATCTTCTGTATATTACCTTG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1350	Approximate temperature 55°C

PCR data Exp. ID 10222
Forward primer (5'-3') TTGTGAATAGAGATCCCAAATTCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTGCATATCTTCTGTATATTACCTTG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1350	Approximate temperature 55°C

PCR data Exp. ID 10223
Forward primer (5'-3') TTGTGAATAGAGATCCCAAATTCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTGCATATCTTCTGTATATTACCTTG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1350	Approximate temperature 55°C

PCR data Exp. ID 12661
Forward primer (5'-3') TTGTGAATAGAGATCCCAAATTCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTGCATATCTTCTGTATATTACCTTG	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 1200	Approximate temperature 55°C

PCR data Exp. ID 12662
Forward primer (5'-3') TTGTGAATAGAGATCCCAAATTCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTGCATATCTTCTGTATATTACCTTG	Enzymes
Accessions and product sizes Solanum melongena TA2986: 1250	Approximate temperature 55°C

PCR data Exp. ID 12663
Forward primer (5'-3') TTGTGAATAGAGATCCCAAATTCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTGCATATCTTCTGTATATTACCTTG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 1650	Approximate temperature 55°C

PCR data Exp. ID 12664
Forward primer (5'-3') TTGTGAATAGAGATCCCAAATTCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTGCATATCTTCTGTATATTACCTTG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 1200	Approximate temperature 55°C

PCR data Exp. ID 12665
Forward primer (5'-3') TTGTGAATAGAGATCCCAAATTCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTGCATATCTTCTGTATATTACCTTG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 1650	Approximate temperature 55°C

PCR data Exp. ID 12666
Forward primer (5'-3') TTGTGAATAGAGATCCCAAATTCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTGCATATCTTCTGTATATTACCTTG	Enzymes
Accessions and product sizes Physalis TA1367: 1700	Approximate temperature 55°C

PCR data Exp. ID 12667
Forward primer (5'-3') TTGTGAATAGAGATCCCAAATTCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTGCATATCTTCTGTATATTACCTTG	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 1950	Approximate temperature 55°C

PCR data Exp. ID 32778
Forward primer (5'-3') TTGTGAATAGAGATCCCAAATTCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTGCATATCTTCTGTATATTACCTTG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 1650	Approximate temperature 55°C

PCR data Exp. ID 32779
Forward primer (5'-3') TTGTGAATAGAGATCCCAAATTCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTGCATATCTTCTGTATATTACCTTG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 1200	Approximate temperature 55°C

PCR data Exp. ID 32780
Forward primer (5'-3') TTGTGAATAGAGATCCCAAATTCACC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTGCATATCTTCTGTATATTACCTTG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 1650	Approximate temperature 55°C

PCR data Exp. ID 10224
Forward primer (5'-3') TTGTGAATAGAGATCCCAAATTCACC	Digested band sizes (using AluI) Solanum lycopersicum LA925: 600 Solanum pennellii LA716: 850	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCCTGCATATCTTCTGTATATTACCTTG	Enzymes All possible enzymes for pennellii and and lycopersicum: AluI, DraI
Accessions and product sizes Solanum pennellii LA716: 1350 Solanum lycopersicum LA925: 1350	Approximate temperature 55°C