Sol Genomics Network

SGN Marker C2_At1g48300

SGN-M6824
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	303773 (SGN) 122233 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U203252	-	-	-
Solanum tuberosum	Single	SGN-U246110	-	-	-
Arabidopsis	Single	At1g48300 on TAIR	-	-	-

Mapped locations

Map: Tomato-EXPIMP 2009
Map version 126 (location: 53427)
Chromosome 12
Position 77.25 cM
Confidence uncalculated
Protocol CAPS

Tomato-EXPIMP 2009

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46588)
Chromosome 12
Position 72.80 cM
Confidence F(LOD3)
Protocol CAPS

Tobacco N. tomentosiformis

Map: Eggplant-COSII
Map version 63 (location: 42184)
Chromosome 5
Position 113.00 cM
Confidence F(LOD3)
Protocol CAPS

Eggplant-COSII

PCR data Exp. ID 43748

Forward primer (5'-3')

TGGGACAGCTTCAACAGCTAAAGG

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

TACACCCTGAAACTCTGACATTAGGA

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Pepper-COSII
Map version 58 (location: 41330)
Chromosome 12
Position 113.20 cM
Confidence F(LOD3)
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43306

Forward primer (5'-3')

TGGGACAGCTTCAACAGCTAAAGG

Accessions and product sizes

Approximate temperature

58°C

Reverse primer (5'-3')

TACACCCTGAAACTCTGACATTAGGA

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38186)
Chromosome 12
Position 105.00 cM
Confidence F(LOD3)
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39467

Forward primer (5'-3')

AAGAAGATGAAATTACTTAAGGGTTTG

Accessions and product sizes

Solanum lycopersicum TA209

520

Solanum pennellii TA56

520

Approximate temperature

55°C

Reverse primer (5'-3')

TTTAGTGTTGCATTCTCAAGTGCTCG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25232)
Chromosome 1
Position 17.85 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10228
Forward primer (5'-3') AAGAAGATGAAATTACTTAAGGGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTTAGTGTTGCATTCTCAAGTGCTCG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 900	Approximate temperature 55°C

PCR data Exp. ID 10229
Forward primer (5'-3') AAGAAGATGAAATTACTTAAGGGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTTAGTGTTGCATTCTCAAGTGCTCG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 900	Approximate temperature 55°C

PCR data Exp. ID 10230
Forward primer (5'-3') AAGAAGATGAAATTACTTAAGGGTTTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTTAGTGTTGCATTCTCAAGTGCTCG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 900	Approximate temperature 55°C

PCR data Exp. ID 10231
Forward primer (5'-3') AAGAAGATGAAATTACTTAAGGGTTTG	Digested band sizes (using HinfI) Solanum lycopersicum LA925: 550 Solanum pennellii LA716: 850	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTTAGTGTTGCATTCTCAAGTGCTCG	Enzymes All possible enzymes for pennellii and and lycopersicum: ApoI,BamHI,BanI,BsaHI,BspDI,BstNI,BstUI,BstYI,DpnII,HindIII,HinfI,Hpy188I,RsaI,ScrFI All possible enzymes for lycopersicum and pimpinellifolium: ApoI,BsiEI,BspDI,BstUI,CfoI/HhaI,DpnII,HindIII,Hpy188I,TaqI
Accessions and product sizes Solanum pennellii LA716: 900 Solanum lycopersicum LA925: 900	Approximate temperature 55°C