Sol Genomics Network

SGN Marker C2_At1g52980

SGN-M6855
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	302053 (SGN) 121609 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U197965	-	-	-
Lycopersicon Combined	Single	SGN-U215221	-	-	-
Solanum tuberosum	Multiple	SGN-U243536	-	-	-
Arabidopsis	Single	At1g52980 on TAIR	-	-	-

Mapped locations

Map: Tomato-EXPEN 2000
Map version 52 (location: 38199)
Chromosome 7
Position 68.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39477

Forward primer (5'-3')

AAAATTGCAAGCACAAACATATGG

Accessions and product sizes

Solanum pennellii TA56

250

Solanum lycopersicum TA209

250

Approximate temperature

55°C

Reverse primer (5'-3')

ATTCCCTAGAGAGCACTCTAAGCC

Digested band sizes (using amplicon difference)

Solanum pennellii TA56

250

Solanum lycopersicum TA209

100+190

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25264)
Chromosome 1
Position 19.74 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10260
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 250	Approximate temperature 55°C

PCR data Exp. ID 10261
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 250	Approximate temperature 55°C

PCR data Exp. ID 10262
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 250	Approximate temperature 55°C

PCR data Exp. ID 12682
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 300	Approximate temperature 55°C

PCR data Exp. ID 12683
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 250	Approximate temperature 55°C

PCR data Exp. ID 12684
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 250	Approximate temperature 55°C

PCR data Exp. ID 12685
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 250	Approximate temperature 55°C

PCR data Exp. ID 12686
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 250	Approximate temperature 55°C

PCR data Exp. ID 12687
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 250	Approximate temperature 55°C

PCR data Exp. ID 12688
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 320	Approximate temperature 55°C

PCR data Exp. ID 12689
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 320	Approximate temperature 55°C

PCR data Exp. ID 12690
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 320	Approximate temperature 55°C

PCR data Exp. ID 32600
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 320	Approximate temperature 55°C

PCR data Exp. ID 32789
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 320	Approximate temperature 55°C

PCR data Exp. ID 32790
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 320	Approximate temperature 55°C

PCR data Exp. ID 32791
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 250	Approximate temperature 55°C

PCR data Exp. ID 32792
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 250	Approximate temperature 55°C

PCR data Exp. ID 32793
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 250	Approximate temperature 55°C

PCR data Exp. ID 10263
Forward primer (5'-3') AAAATTGCAAGCACAAACATATGG	Digested band sizes (using HaeIII) Solanum pennellii LA716: 250 Solanum lycopersicum LA925: 190+100	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ATTCCCTAGAGAGCACTCTAAGCC	Enzymes All possible enzymes for pennellii and and lycopersicum: HaeIII
Accessions and product sizes Solanum pennellii LA716: 250 Solanum lycopersicum LA925: 250	Approximate temperature 55°C