SGN Marker C2_At1g56590

SGN-M6898
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U198144---
Lycopersicon CombinedSingleSGN-U218207---
Solanum tuberosumSingleSGN-U254283---
ArabidopsisSingleAt1g56590 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25308)
Chromosome
1
Position
21.21 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41120
Forward primer (5'-3')
AGATGATAGACAATGGTTTCCCTCTTAC
Accessions and product sizes
Solanum lycopersicum TA209
1200
Solanum pennellii TA56
1100
Approximate temperature
55°C
Reverse primer (5'-3')
AGTCACAACACTCAATACTTTGCTTACG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
1100
Solanum lycopersicum TA209
1200
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10297
Forward primer (5'-3')
AGATGATAGACAATGGTTTCCCTCTTAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGTCACAACACTCAATACTTTGCTTACG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 100
 Approximate temperature
55°C
  
PCR data   Exp. ID 10298
Forward primer (5'-3')
AGATGATAGACAATGGTTTCCCTCTTAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGTCACAACACTCAATACTTTGCTTACG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 100
 Approximate temperature
55°C
  
PCR data   Exp. ID 10299
Forward primer (5'-3')
AGATGATAGACAATGGTTTCCCTCTTAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGTCACAACACTCAATACTTTGCTTACG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 100
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U218207
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At1g56590  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6898 marker 6898
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