SGN Marker C2_At1g63260

SGN-M6932
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle307429 (SGN)
126716 (CGN)		---
Lycopersicon CombinedSingleSGN-U235652---
Solanum tuberosumSingleSGN-U251188---
ArabidopsisSingleAt1g63260 on TAIR---
Mapped locations  
Map: Pepper-COSII   
Map version
58 (location: 41338)
Chromosome
1
Position
30.20 cM
Confidence
I
Protocol
dCAPS


Pepper-COSII

PCR data   Exp. ID 43314
Forward primer (5'-3')
ATTTTGGTTCTCAATGTGTCTCACAGC
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
ACTCGTCGGATGAAAGCTCAAGTCATAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38225)
Chromosome
8
Position
68.70 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39497
Forward primer (5'-3')
TGAAGCTGGTTGCTGCAGACCACCATCT
Accessions and product sizes
Solanum pennellii TA56
1500
Solanum lycopersicum TA209
1480
Approximate temperature
60°C
Reverse primer (5'-3')
ACTCGTCGGATGAAAGCTCAAGTCATAG
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
650
Solanum pennellii TA56
1000
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25344)
Chromosome
1
Position
23.47 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At1g63260  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D6932 marker 6932
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