SGN Marker C2_At1g70610

SGN-M7016
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle302827 (SGN)
123918 (CGN)		---
Lycopersicon CombinedMultipleSGN-U226307---
Solanum tuberosumSingleSGN-U250695---
ArabidopsisSingleAt1g70610 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25429)
Chromosome
1
Position
26.63 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41152
Forward primer (5'-3')
TGATAATGATTTGCTCAGTGGAGG
Accessions and product sizes
Solanum lycopersicum TA209
300
Solanum pennellii TA56
300
Approximate temperature
55°C
Reverse primer (5'-3')
TGTGCAATCACAATGACAGTTCTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10398
Forward primer (5'-3')
TGATAATGATTTGCTCAGTGGAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTGCAATCACAATGACAGTTCTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 300
 Approximate temperature
55°C
  
PCR data   Exp. ID 10399
Forward primer (5'-3')
TGATAATGATTTGCTCAGTGGAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTGCAATCACAATGACAGTTCTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 300
 Approximate temperature
55°C
  
PCR data   Exp. ID 10400
Forward primer (5'-3')
TGATAATGATTTGCTCAGTGGAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTGCAATCACAATGACAGTTCTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 300
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U226307
SGN-U275687
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At1g70610  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7016 marker 7016
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