Sol Genomics Network

SGN Marker C2_At1g80360

SGN-M7127
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	309538 (SGN) 126283 (CGN)	-	-	-
Solanum tuberosum	Single	SGN-U245542	-	-	-
Arabidopsis	Single	At1g80360 on TAIR	-	-	-

Mapped locations

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46621)
Chromosome 3
Position 70.30 cM
Confidence F(LOD3)
Protocol CAPS

Tobacco N. tomentosiformis

Map: Tomato-EXPEN 2000
Map version 52 (location: 38281)
Chromosome 3
Position 149.50 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39547

Forward primer (5'-3')

ATGGTTACTGCCGGTGCAAATCAG

Accessions and product sizes

Solanum pennellii TA56

200

Solanum lycopersicum TA209

200

Approximate temperature

55°C

Reverse primer (5'-3')

TCGGTAACACCTGTCATCTGGAATG

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

200

Solanum pennellii TA56

150

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25541)
Chromosome 1
Position 30.21 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10484
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1400	Approximate temperature 55°C

PCR data Exp. ID 10485
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1400	Approximate temperature 55°C

PCR data Exp. ID 10486
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1400	Approximate temperature 55°C

PCR data Exp. ID 12870
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 1500	Approximate temperature 55°C

PCR data Exp. ID 12871
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 1500	Approximate temperature 55°C

PCR data Exp. ID 12872
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 380	Approximate temperature 55°C

PCR data Exp. ID 12873
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 380	Approximate temperature 55°C

PCR data Exp. ID 12874
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 380	Approximate temperature 55°C

PCR data Exp. ID 12875
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 380	Approximate temperature 55°C

PCR data Exp. ID 12876
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Physalis TA1367: 1500	Approximate temperature 55°C

PCR data Exp. ID 12877
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 1100	Approximate temperature 55°C

PCR data Exp. ID 12878
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 1100	Approximate temperature 55°C

PCR data Exp. ID 12879
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 1100	Approximate temperature 55°C

PCR data Exp. ID 32614
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1500	Approximate temperature 55°C

PCR data Exp. ID 32875
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1500	Approximate temperature 55°C

PCR data Exp. ID 32876
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1500	Approximate temperature 55°C

PCR data Exp. ID 32877
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 380	Approximate temperature 55°C

PCR data Exp. ID 32878
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 380	Approximate temperature 55°C

PCR data Exp. ID 32879
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 380	Approximate temperature 55°C

PCR data Exp. ID 10487
Forward primer (5'-3') ATGGTTACTGCCGGTGCAAATCAG	Digested band sizes (using HinfI) Solanum pennellii LA716: 1400 Solanum lycopersicum LA925: 500+450	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TCGGTAACACCTGTCATCTGGAATG	Enzymes All possible enzymes for pennellii and and lycopersicum: HinfI
Accessions and product sizes Solanum pennellii LA716: 1400 Solanum lycopersicum LA925: 1400	Approximate temperature 55°C