Sol Genomics Network

SGN Marker C2_At1g80460

SGN-M7129
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	304906 (SGN) 121866 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U197189	-	-	-
Lycopersicon Combined	Single	SGN-U216479	-	-	-
Solanum tuberosum	Multiple	SGN-U246985	-	-	-
Arabidopsis	Single	At1g80460 on TAIR	-	-	-

Mapped locations

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46622)
Chromosome 3
Position 46.40 cM
Confidence I(LOD2)
Protocol CAPS

Tobacco N. tomentosiformis

Map: Tomato-EXPEN 2000
Map version 52 (location: 38282)
Chromosome 3
Position 129.50 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39548

Forward primer (5'-3')

TCTTTATAACGCCATTGTTTGGATG

Accessions and product sizes

Solanum pennellii TA56

850

Solanum lycopersicum TA209

850

Approximate temperature

55°C

Reverse primer (5'-3')

AATCTCAGAATTGCTAATAATCTTTGG

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

400+450

Solanum pennellii TA56

850

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25543)
Chromosome 1
Position 30.25 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10488
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1100	Approximate temperature 53°C

PCR data Exp. ID 10489
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1100	Approximate temperature 53°C

PCR data Exp. ID 10490
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1100	Approximate temperature 53°C

PCR data Exp. ID 12236
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCAATGGCAATGGAGCCTTC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 1300	Approximate temperature 55°C

PCR data Exp. ID 12237
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCAATGGCAATGGAGCCTTC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 1300	Approximate temperature 55°C

PCR data Exp. ID 12238
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCAATGGCAATGGAGCCTTC	Enzymes
Accessions and product sizes Physalis TA1367: 1300	Approximate temperature 55°C

PCR data Exp. ID 12239
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCAATGGCAATGGAGCCTTC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 1200	Approximate temperature 55°C

PCR data Exp. ID 12880
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 1080	Approximate temperature 55°C

PCR data Exp. ID 12881
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Solanum melongena TA2986: 1100	Approximate temperature 55°C

PCR data Exp. ID 12882
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 1050	Approximate temperature 55°C

PCR data Exp. ID 12883
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 1400	Approximate temperature 55°C

PCR data Exp. ID 12884
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 1400	Approximate temperature 55°C

PCR data Exp. ID 12885
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 1050	Approximate temperature 55°C

PCR data Exp. ID 12886
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 1000	Approximate temperature 55°C

PCR data Exp. ID 12887
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 1080	Approximate temperature 55°C

PCR data Exp. ID 12888
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Physalis TA1367: 1100	Approximate temperature 55°C

PCR data Exp. ID 12889
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 1050	Approximate temperature 55°C

PCR data Exp. ID 12890
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 1050	Approximate temperature 55°C

PCR data Exp. ID 32615
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1100	Approximate temperature 55°C

PCR data Exp. ID 32880
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1100	Approximate temperature 55°C

PCR data Exp. ID 32881
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1100	Approximate temperature 55°C

PCR data Exp. ID 32882
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 1400	Approximate temperature 55°C

PCR data Exp. ID 32883
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 1400	Approximate temperature 55°C

PCR data Exp. ID 32884
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 1050	Approximate temperature 55°C

PCR data Exp. ID 32885
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 1000	Approximate temperature 55°C

PCR data Exp. ID 33331
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGCAATGGCAATGGAGCCTTC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 1300	Approximate temperature 55°C

PCR data Exp. ID 10491
Forward primer (5'-3') TCTTTATAACGCCATTGTTTGGATG	Digested band sizes (using DraI) Solanum pennellii LA716: 1100 Solanum lycopersicum LA925: 1050	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATCTCAGAATTGCTAATAATCTTTGG	Enzymes All possible enzymes for pennellii and and lycopersicum: DraI, DpnII All possible enzymes for lycopersicum and pimpinellifolium: DpnII
Accessions and product sizes Solanum lycopersicum LA925: 1100 Solanum pennellii LA716: 1100	Approximate temperature 53°C