SGN Marker C2_At1g80600

SGN-M7131
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U198920---
Lycopersicon CombinedMultipleSGN-U216998---
Solanum tuberosumSingleSGN-U247198---
ArabidopsisSingleAt1g80600 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25545)
Chromosome
1
Position
30.30 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41188
Forward primer (5'-3')
TACATATGCTAGGGCTCCATTGG
Accessions and product sizes
Solanum pennellii TA56
1500
Solanum lycopersicum TA209
1500
Approximate temperature
55°C
Reverse primer (5'-3')
AGCAACGGCACCCATGGTCC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
1500
Solanum pennellii TA56
1100
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10492
Forward primer (5'-3')
TACATATGCTAGGGCTCCATTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCAACGGCACCCATGGTCC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1500
 Approximate temperature
55°C
  
PCR data   Exp. ID 10493
Forward primer (5'-3')
TACATATGCTAGGGCTCCATTGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCAACGGCACCCATGGTCC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1500
 Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At1g80600  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7131 marker 7131
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