Sol Genomics Network

SGN Marker C2_At2g04700

SGN-M7166
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Capsicum annuum	Single	SGN-U204561	-	-	-
Lycopersicon Combined	Single	SGN-U215038	-	-	-
Solanum tuberosum	Single	SGN-U247828	-	-	-
Arabidopsis	Single	At2g04700 on TAIR	-	-	-

Mapped locations

Map: Tomato - Kazusa and SolCAP markers mapped to genome
Map version 105 (location: 49225)
Chromosome 2
Position 44.26 MB
Confidence uncalculated
Protocol CAPS

Tomato - Kazusa and SolCAP markers mapped to genome

Map: Kazusa F2-2000 genetic map
Map version 103 (location: 47156)
Chromosome 2
Position 104.00 cM
Confidence uncalculated
Protocol unknown

Kazusa F2-2000 genetic map

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46626)
Chromosome 2
Position 7.90 cM
Confidence I(LOD2)
Protocol PCR

Tobacco N. tomentosiformis

Map: Tobacco N. acuminata
Map version 89 (location: 46458)
Chromosome 2
Position 18.30 cM
Confidence I(LOD2)
Protocol dCAPS

Tobacco N. acuminata

Map: Pepper-COSII
Map version 58 (location: 41367)
Chromosome 2
Position 128.80 cM
Confidence I(LOD2)
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43343

Forward primer (5'-3')

ATGAGAACTCTTCAAGCTTCCACCTC

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

TGACCACAGAAGTAACACCTTTGTCC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38291)
Chromosome 2
Position 97.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39556

Forward primer (5'-3')

ATGAGAACTCTTCAAGCTTCCACCTC

Accessions and product sizes

Solanum pennellii TA56

950

Solanum lycopersicum TA209

1200

Approximate temperature

55°C

Reverse primer (5'-3')

TGACCACAGAAGTAACACCTTTGTCC

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

1200

Solanum pennellii TA56

950

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25581)
Chromosome 2
Position 1.65 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10516
Forward primer (5'-3') ATGAGAACTCTTCAAGCTTCCACCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGACCACAGAAGTAACACCTTTGTCC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 780	Approximate temperature 55°C

PCR data Exp. ID 10517
Forward primer (5'-3') ATGAGAACTCTTCAAGCTTCCACCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGACCACAGAAGTAACACCTTTGTCC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 780	Approximate temperature 55°C

PCR data Exp. ID 10518
Forward primer (5'-3') ATGAGAACTCTTCAAGCTTCCACCTC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGACCACAGAAGTAACACCTTTGTCC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 780	Approximate temperature 55°C

PCR data Exp. ID 10519
Forward primer (5'-3') ATGAGAACTCTTCAAGCTTCCACCTC	Digested band sizes (using HinfI) Solanum lycopersicum LA925: 650 Solanum pennellii LA716: 780	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TGACCACAGAAGTAACACCTTTGTCC	Enzymes All possible enzymes for pennellii and and lycopersicum: AluI,AseI,BclI,BglII,BstUI,BstYI,HinfI All possible enzymes for lycopersicum and pimpinellifolium: AluI,BglII,BstUI,BstYI
Accessions and product sizes Solanum lycopersicum LA925: 780 Solanum pennellii LA716: 780	Approximate temperature 55°C