SGN Marker SSR47
SGN-M720
| Synonyms |
| Locus associations |
| SSR info |
Annealing temperatures: Low: 42.857 High: 40.909
Repeat motif: AT Repeat number: 14
Repeat motif: Repeat number:
Forward primer: TCCTCAAGAAATGAAGCTCTGA
Reverse primer: CCTTGGAGATAACAACCACAA
Predicted size: 191
| Derivations |
This marker was derived from EST read SGN-E92362
 Mapped locations
|
Mapped locations
|  Tomato-EXPEN 2000 |
| Other PCR data |
| ||||||||||||||
| Overgo hybridization and physical mapping |
SSR47 was used as an overgo probe on plate 1 [well C4]
Plausible BAC Matches: P139L03, P062M18, P303N06, P150M10, P302C18, P263A24, P219C13, P327C18, P318G15, P067A09, P214J08, P286B18
Overgo Sequences
|
A sequence
ACCGGGCCATTTTACTCTAGCACT
|
|
B sequence
GACCCGGTTCAATACTAGTGCTAG
|
|
AB sequence
ACCGGGCCATTTTACTCTAGCACTAGTATT
|
|
Marker sequence
ATATAAATAAATACATTCAAAATTTATTCATGATAAAGATCAAACTTATA
TTGGCACTACATTCATTGACATTAACAATTCCTCAAGAAATGAAGCTCTG ACATCAAATTTCTCACAAAAAGAAATATTATAATATATATATATATATAT ATATATATATTCTCAATAGGAAAACAAGCTAAAACAACATATGCTAAGAA AAATCTTAACACATGAACATATGCAAGCAATGAACCAGACTAGTAACTAT TGTGGTTGTTATCTCCAAGGTATATATATTAATAAATACCCCATAAGTTG TTGATATTTTTGATAAAAATTATATTAATAAATACCCTATAAGATAAACC CTCAGCGGTCGCTGATTTAAAATAATGTATTCAAGAGGAAGTCAAACCAG AATAAAATGGCACCCCGGTAGCAGGTATCCACTCACTCCCTTGAATAAAA TTTCCAACAGTGAATTGACTGGCCTCACTAGAGCTATTAATGACCCGATA ACCGGGCCATTTTACTCTAGCACTAGTATTGAACCGGGTCCC |
| Related Markers
|
Related Genotyped Markers: These markers have been genotyped and share a name with this marker
| Genomic location of SSR47
|
| User comments |
Please wait, checking for comments. (If comments do not show up, access them here)
Working
