SGN Marker C2_At2g18400

SGN-M7227
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeMultiple300168 (SGN)
121810 (CGN)
---
Capsicum annuumSingleSGN-U201348---
Lycopersicon CombinedSingleSGN-U220372---
ArabidopsisSingleAt2g18400 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25643)
Chromosome
2
Position
8.00 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41211
Forward primer (5'-3')
TAAGCTGGGTTACAGCCATGAGG
Accessions and product sizes
Solanum lycopersicum TA209
1350
Solanum pennellii TA56
1350
Approximate temperature
55°C
Reverse primer (5'-3')
TCCCTGCTTCTTTTTTATCACTTCATC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
350+500
Solanum pennellii TA56
500+850
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10584
Forward primer (5'-3')
TAAGCTGGGTTACAGCCATGAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCCTGCTTCTTTTTTATCACTTCATC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 200
Approximate temperature
55°C
  
PCR data   Exp. ID 10585
Forward primer (5'-3')
TAAGCTGGGTTACAGCCATGAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCCTGCTTCTTTTTTATCACTTCATC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 200
Approximate temperature
55°C
  
PCR data   Exp. ID 10586
Forward primer (5'-3')
TAAGCTGGGTTACAGCCATGAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCCTGCTTCTTTTTTATCACTTCATC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 200
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At2g18400  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7227 marker 7227
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