Sol Genomics Network

SGN Marker C2_At2g18710

SGN-M7230
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	303383 (SGN) 125042 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U203635	-	-	-
Lycopersicon Combined	Multiple	SGN-U216247	-	-	-
Solanum tuberosum	Single	SGN-U252384	-	-	-
Arabidopsis	Single	At2g18710 on TAIR	-	-	-

Mapped locations

Map: Eggplant-COSII
Map version 63 (location: 42198)
Chromosome 7
Position 9.80 cM
Confidence F(LOD3)
Protocol CAPS

Eggplant-COSII

PCR data Exp. ID 43763

Forward primer (5'-3')

TAAAAGCACAGCGGCATTCATC

Accessions and product sizes

Approximate temperature

53°C

Reverse primer (5'-3')

AGAACCAAGAACTGATATCCGGC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Pepper-COSII
Map version 58 (location: 41372)
Chromosome 7
Position 0.00 cM
Confidence F(LOD3)
Protocol CAPS

Pepper-COSII

PCR data Exp. ID 43348

Forward primer (5'-3')

TAAAAGCACAGCGGCATTCATC

Accessions and product sizes

Approximate temperature

55°C

Reverse primer (5'-3')

AGAACCAAGAACTGATATCCGGC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38309)
Chromosome 7
Position 0.10 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39571

Forward primer (5'-3')

TAAAAGCACAGCGGCATTCATC

Accessions and product sizes

Solanum lycopersicum TA209

900

Solanum pennellii TA56

900

Approximate temperature

55°C

Reverse primer (5'-3')

AGAACCAAGAACTGATATCCGGC

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25646)
Chromosome 2
Position 8.12 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10587
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 1150	Approximate temperature 55°C

PCR data Exp. ID 10588
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 1150	Approximate temperature 55°C

PCR data Exp. ID 10589
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 1150	Approximate temperature 55°C

PCR data Exp. ID 12938
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 850	Approximate temperature 55°C

PCR data Exp. ID 12939
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 750	Approximate temperature 55°C

PCR data Exp. ID 12940
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 1350	Approximate temperature 55°C

PCR data Exp. ID 12941
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 750	Approximate temperature 55°C

PCR data Exp. ID 12942
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 750	Approximate temperature 55°C

PCR data Exp. ID 12943
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 750	Approximate temperature 55°C

PCR data Exp. ID 12944
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 750	Approximate temperature 55°C

PCR data Exp. ID 12945
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 800	Approximate temperature 55°C

PCR data Exp. ID 12946
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Physalis TA1367: 1000	Approximate temperature 55°C

PCR data Exp. ID 12947
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 1250	Approximate temperature 55°C

PCR data Exp. ID 12948
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 1200+700	Approximate temperature 55°C

PCR data Exp. ID 12949
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 1250	Approximate temperature 55°C

PCR data Exp. ID 12950
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 1250	Approximate temperature 55°C

PCR data Exp. ID 12951
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Coffea canephora BP409: Multiple	Approximate temperature 55°C

PCR data Exp. ID 32907
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 750	Approximate temperature 55°C

PCR data Exp. ID 32908
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: 750	Approximate temperature 55°C

PCR data Exp. ID 32909
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 750	Approximate temperature 55°C

PCR data Exp. ID 32910
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 750	Approximate temperature 55°C

PCR data Exp. ID 10590
Forward primer (5'-3') TAAAAGCACAGCGGCATTCATC	Digested band sizes (using HinfI) Solanum lycopersicum LA925: 900 Solanum pennellii LA716: 600	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AGAACCAAGAACTGATATCCGGC	Enzymes All possible enzymes for pennellii and and lycopersicum: HinfI
Accessions and product sizes Solanum pennellii LA716: 1150 Solanum lycopersicum LA925: 1150	Approximate temperature 55°C