SGN Marker C2_At2g21620

SGN-M7270
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U199685---
Lycopersicon CombinedMultipleSGN-U214986---
Solanum tuberosumSingleSGN-U250517---
ArabidopsisSingleAt2g21620 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25685)
Chromosome
2
Position
9.26 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41225
Forward primer (5'-3')
ATGAGGCTACGCAAGGACTCATGG
Accessions and product sizes
Solanum lycopersicum TA209
400
Solanum pennellii TA56
400
Approximate temperature
55°C
Reverse primer (5'-3')
TATGCCACGTCCCCTGGTTCC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
50+150+200
Solanum lycopersicum TA209
300
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10625
Forward primer (5'-3')
ATGAGGCTACGCAAGGACTCATGG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TATGCCACGTCCCCTGGTTCC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1650
Approximate temperature
55°C
  
PCR data   Exp. ID 10626
Forward primer (5'-3')
ATGAGGCTACGCAAGGACTCATGG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TATGCCACGTCCCCTGGTTCC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1650
Approximate temperature
55°C
  
PCR data   Exp. ID 10627
Forward primer (5'-3')
ATGAGGCTACGCAAGGACTCATGG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
TATGCCACGTCCCCTGGTTCC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1650
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At2g21620F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At2g21620  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7270 marker 7270
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