SGN Marker C2_At2g22370

SGN-M7275
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle303302 (SGN)
123593 (CGN)
---
Lycopersicon CombinedSingleSGN-U220315---
Solanum tuberosumSingleSGN-U265104---
ArabidopsisSingleAt2g22370 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25690)
Chromosome
2
Position
9.51 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41227
Forward primer (5'-3')
TTGGTGGTCCAATGAGAGGTGCTG
Accessions and product sizes
Solanum pennellii TA56
240
Solanum lycopersicum TA209
240
Approximate temperature
55°C
Reverse primer (5'-3')
TGTGCCTCCACCATCAGACATCAG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
90+150
Solanum lycopersicum TA209
90+140
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10631
Forward primer (5'-3')
TTGGTGGTCCAATGAGAGGTGCTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTGCCTCCACCATCAGACATCAG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 500
Approximate temperature
55°C
  
PCR data   Exp. ID 10632
Forward primer (5'-3')
TTGGTGGTCCAATGAGAGGTGCTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTGCCTCCACCATCAGACATCAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 500
Approximate temperature
55°C
  
PCR data   Exp. ID 10633
Forward primer (5'-3')
TTGGTGGTCCAATGAGAGGTGCTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGTGCCTCCACCATCAGACATCAG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 500
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At2g22370F.cds.txt, plain text
Forward amplicon sequence for S. pimpinellifolium LA1589, AB1 chromatogram - [View]
Forward amplicon sequence for S. pimpinellifolium LA1589, PDF chromatogram
Forward amplicon sequence for S. pimpinellifolium LA1589, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, PDF chromatogram
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, PDF chromatogram
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At2g22370  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7275 marker 7275
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