SGN Marker C2_At2g23670

SGN-M7278
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle309060 (SGN)
130672 (CGN)
---
Capsicum annuumSingleSGN-U204161---
Lycopersicon CombinedMultipleSGN-U217462---
Solanum tuberosumSingleSGN-U247190---
ArabidopsisSingleAt2g23670 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25694)
Chromosome
2
Position
10.07 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41228
Forward primer (5'-3')
TGAAAGCGCTGGAGATGCCGTC
Accessions and product sizes
Solanum pennellii TA56
1400
Solanum lycopersicum TA209
1400
Approximate temperature
55°C
Reverse primer (5'-3')
TTTGAGGTTCAGGTCCTAAAATACC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
1400
Solanum lycopersicum TA209
1200
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 32239
Forward primer (5'-3')
TGAAAGCGCTGGAGATGCCGTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTTGAGGTTCAGGTCCTAAAATACC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 350
Approximate temperature
55°C
  
PCR data   Exp. ID 32240
Forward primer (5'-3')
TGAAAGCGCTGGAGATGCCGTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTTGAGGTTCAGGTCCTAAAATACC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 350
Approximate temperature
55°C
  
PCR data   Exp. ID 32241
Forward primer (5'-3')
TGAAAGCGCTGGAGATGCCGTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTTGAGGTTCAGGTCCTAAAATACC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 350
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At2g23670  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7278 marker 7278
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