Sol Genomics Network

SGN Marker C2_At2g24090

SGN-M7281
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	308290 (SGN) 128738 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U200041	-	-	-
Lycopersicon Combined	Single	SGN-U218035	-	-	-
Solanum tuberosum	Single	SGN-U250489	-	-	-
Arabidopsis	Single	At2g24090 on TAIR	-	-	-

Mapped locations

Map: Tobacco N. tomentosiformis
Map version 91 (location: 46631)
Chromosome 11
Position 8.80 cM
Confidence F(LOD3)
Protocol CAPS

Tobacco N. tomentosiformis

Map: Tomato-EXPEN 2000
Map version 52 (location: 38319)
Chromosome 7
Position 0.00 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39579

Forward primer (5'-3')

AGGAGGAGAGCTGGGAAGCAG

Accessions and product sizes

Solanum lycopersicum TA209

2700

Solanum pennellii TA56

2500

Approximate temperature

55°C

Reverse primer (5'-3')

AATGCACCGATTACATTGTTG

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

2700

Solanum pennellii TA56

2500

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25696)
Chromosome 2
Position 10.25 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10641
Forward primer (5'-3') AGGAGGAGAGCTGGGAAGCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATGCACCGATTACATTGTTG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 2500	Approximate temperature 55°C

PCR data Exp. ID 10642
Forward primer (5'-3') AGGAGGAGAGCTGGGAAGCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATGCACCGATTACATTGTTG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 2700	Approximate temperature 55°C

PCR data Exp. ID 10643
Forward primer (5'-3') AGGAGGAGAGCTGGGAAGCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATGCACCGATTACATTGTTG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 2700	Approximate temperature 55°C

PCR data Exp. ID 12973
Forward primer (5'-3') AGGAGGAGAGCTGGGAAGCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATGCACCGATTACATTGTTG	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 1650	Approximate temperature 55°C

PCR data Exp. ID 12974
Forward primer (5'-3') AGGAGGAGAGCTGGGAAGCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATGCACCGATTACATTGTTG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12975
Forward primer (5'-3') AGGAGGAGAGCTGGGAAGCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATGCACCGATTACATTGTTG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12976
Forward primer (5'-3') AGGAGGAGAGCTGGGAAGCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATGCACCGATTACATTGTTG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: Multiple	Approximate temperature 55°C

PCR data Exp. ID 12977
Forward primer (5'-3') AGGAGGAGAGCTGGGAAGCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATGCACCGATTACATTGTTG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 3000	Approximate temperature 55°C

PCR data Exp. ID 12978
Forward primer (5'-3') AGGAGGAGAGCTGGGAAGCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATGCACCGATTACATTGTTG	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 3000+500	Approximate temperature 55°C

PCR data Exp. ID 12979
Forward primer (5'-3') AGGAGGAGAGCTGGGAAGCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATGCACCGATTACATTGTTG	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 3000	Approximate temperature 55°C

PCR data Exp. ID 12980
Forward primer (5'-3') AGGAGGAGAGCTGGGAAGCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATGCACCGATTACATTGTTG	Enzymes
Accessions and product sizes Coffea canephora BP409: 2300+250	Approximate temperature 55°C

PCR data Exp. ID 32919
Forward primer (5'-3') AGGAGGAGAGCTGGGAAGCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATGCACCGATTACATTGTTG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: Multiple	Approximate temperature 55°C

PCR data Exp. ID 32920
Forward primer (5'-3') AGGAGGAGAGCTGGGAAGCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATGCACCGATTACATTGTTG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3347: Multiple	Approximate temperature 55°C

PCR data Exp. ID 32921
Forward primer (5'-3') AGGAGGAGAGCTGGGAAGCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATGCACCGATTACATTGTTG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: Multiple	Approximate temperature 55°C

PCR data Exp. ID 32922
Forward primer (5'-3') AGGAGGAGAGCTGGGAAGCAG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATGCACCGATTACATTGTTG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 3000	Approximate temperature 55°C

PCR data Exp. ID 10644
Forward primer (5'-3') AGGAGGAGAGCTGGGAAGCAG	Digested band sizes (using amplicon difference) Solanum lycopersicum LA925: 2700 Solanum pennellii LA716: 2500	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') AATGCACCGATTACATTGTTG	Enzymes All possible enzymes for pennellii and and lycopersicum: amplicon difference
Accessions and product sizes Solanum pennellii LA716: 2500 Solanum lycopersicum LA925: 2700	Approximate temperature 55°C