SGN Marker CT194
SGN-M73
Synonyms |
Locus associations |
RFLP details |
Insert size
1200
|
Vector
pBLUESC
|
Cutting Site
EcoR1
|
Drug Resistance
AMP
|
Image
CT194 image not available
|
Forward sequence
TTTTTTTTTTTCCTCCTCCAACTCCTCCCATTTCATATCCCTACACTTCTTCTTTTTACCCATCTACTATGAGCTCTGAGGTTTGTTCCA
CTTCCACAGAGATGAATTCCCAAATCTTTTCAACTGGGTTTTCTGGGTATGGAATGGAGCAACAGGGTTCAATTGGGCTGAATCAGTTAA CCCCAATTCAGATCCAGCAAATTCAAGCTCAAATCAACTTTCAAAACCAACAACAACAGCAGCAGCAGCAGATGATGTTACAGACTGCCC ATCATGCTTCCACCATGAATTTCTTGGCTCCAAAGCCGGTTCCAATGAAGCAATCTGGGTCGCCACCAAAACCCACGAAGCTCTACAGAG GTGTTAGACAACGCCACTGGGGTAAGTGGGTCGCTGAGATCCGTTTGCCTAAGAACCGAACCCGCCTTTGGCTTGGTACATTTGACACCG C |
Reverse sequence
CTTTTTTTTTTTTTTTTTAGCTTAACCAATTTGGATTTTTATAAACCTAAAATATGAAGAAGAAAAAAACTACAAAGGAACTTGCCCTGC
AATTGCCAAAAACTCCATTGCAGTGACTCAATGTTCCATGGACCTAGTGACCTAGAACCACCATTAACAATTATAAACAATGCAAAAATA CAAAAAAAAAAAAATACATAAGACCTCATTAAACCTAGACTTAATTTGATAATTACTACTAATTTTTTTCTTAATTATTTTCTAATTTTA TAGAGAGGCCCAATCAATTTCATGAGATGGATACTTCTGCAACAAAAAATTTTCTGACATGTCCCAAGTTGGCTCTTCCTCAGTGAACTC CGGGAATATCAGTTCGGTCACCGGCGATGATCCACCGGAACCGGAATGGGACCCGTCACTTTCGGATCCA |
RFLP sequence matches to unigenes |
Unigene | e value | Match length (bp) | Strand |
---|---|---|---|
SGN-U156483 | 3.2e-05 | 24 (5.3% of RFLP seq) | + |
SGN-U156483 | 3.2e-05 | 24 (5.3% of RFLP seq) | + |
SGN-U148080 | 2e-06 | 26 (5.8% of RFLP seq) | + |
SGN-U143801 | 440 (97.6% of RFLP seq) | + | |
SGN-U143801 | 1.2e-75 | 163 (37.9% of RFLP seq) | - |
SGN-U143801 | 3e-119 | 236 (54.9% of RFLP seq) | - |
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| ![]() Potato meta-QTL consensus map |
| ![]() Sun1642 x LA1589 |
| ![]() Integrated map: Yellow Stuffer X LA1589 and Sun1642 X LA1589 |
| ![]() Tomato-EXPIMP 2008 |
| ![]() Tomato-EXPEN 2000 |
| ![]() Potato-TXB 1992 |
| ![]() Tomato-EXPIMP 2001 |
Overgo hybridization and physical mapping |
CT194 was used as an overgo probe on plate 8 [well D2]
Plausible BAC Matches: None
Overgo Sequences
A sequence
TCTGGGTATGGAATGGAGCAACAG
|
B sequence
TCAGCCCAATTGAACCCTGTTGCT
|
AB sequence
TCTGGGTATGGAATGGAGCAACAGGGTTCA
|
Marker sequence
TTTTTTTTTTTCCTCCTCCAACTCCTCCCATTTCATATCCCTACACTTCT
TCTTTTTACCCATCTACTATGAGCTCTGAGGTTTGTTCCACTTCCACAGA GATGAATTCCCAAATCTTTTCAACTGGGTTTTCTGGGTATGGAATGGAGC AACAGGGTTCAATTGGGCTGAATCAGTTAACCCCAATTCAGATCCAGCAA ATTCAAGCTCAAATCAACTTTCAAAACCAACAACAACAGCAGCAGCAGCA GATGATGTTACAGACTGCCCATCATGCTTCCACCATGAATTTCTTGGCTC CAAAGCCGGTTCCAATGAAGCAATCTGGGTCGCCACCAAAACCCACGAAG CTCTACAGAGGTGTTAGACAACGCCACTGGGGTAAGTGGGTCGCTGAGAT CCGTTTGCCTAAGAACCGAACCCGCCTTTGGCTTGGTACATTTGACACCG C |
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Related Genotyped Markers: These markers have been genotyped and share a name with this marker
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User comments |
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