SGN Marker C2_At2g26430

SGN-M7310
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle311276 (SGN)
129460 (CGN)
---
Capsicum annuumSingleSGN-U203863---
Lycopersicon CombinedSingleSGN-U219353---
ArabidopsisSingleAt2g26430 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25727)
Chromosome
2
Position
11.25 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41240
Forward primer (5'-3')
TCATCTGCCATGTCGAGCATCCTC
Accessions and product sizes
Solanum lycopersicum TA209
1150
Solanum pennellii TA56
1150
Approximate temperature
55°C
Reverse primer (5'-3')
AGCTTCTTGTCTCAACTCTGCAGGTG
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
600
Solanum lycopersicum TA209
900
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10675
Forward primer (5'-3')
TCATCTGCCATGTCGAGCATCCTC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
AGCTTCTTGTCTCAACTCTGCAGGTG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 100
Approximate temperature
55°C
  
PCR data   Exp. ID 10676
Forward primer (5'-3')
TCATCTGCCATGTCGAGCATCCTC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
AGCTTCTTGTCTCAACTCTGCAGGTG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 100
Approximate temperature
55°C
  
PCR data   Exp. ID 10677
Forward primer (5'-3')
TCATCTGCCATGTCGAGCATCCTC
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
AGCTTCTTGTCTCAACTCTGCAGGTG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 100
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format

Genomic location of C2_At2g26430  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7310 marker 7310
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