SGN Marker C2_At2g27100

SGN-M7319
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle307848 (SGN)
131232 (CGN)
---
Solanum tuberosumSingleSGN-U250059---
ArabidopsisSingleAt2g27100 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25736)
Chromosome
2
Position
11.58 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41242
Forward primer (5'-3')
AAGGTGGCAGAAATGGGAGGTC
Accessions and product sizes
Solanum pennellii TA56
1200
Solanum lycopersicum TA209
1200
Approximate temperature
55°C
Reverse primer (5'-3')
ATCTATTACGGTAACTTCATCTTCAGG
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
450+740
Solanum pennellii TA56
180+210+290+520
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10694
Forward primer (5'-3')
AAGGTGGCAGAAATGGGAGGTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATCTATTACGGTAACTTCATCTTCAGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2500
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At2g27100  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7319 marker 7319
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