SGN Marker C2_At2g31190

SGN-M7363
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle301601 (SGN)
121319 (CGN)
---
Lycopersicon CombinedSingleSGN-U229593---
Solanum tuberosumSingleSGN-U257558---
ArabidopsisSingleAt2g31190 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25780)
Chromosome
2
Position
13.30 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41258
Forward primer (5'-3')
ACACACAATTTCGAGCTCTACAACAC
Accessions and product sizes
Solanum pennellii TA56
300
Solanum lycopersicum TA209
300
Approximate temperature
55°C
Reverse primer (5'-3')
ACGCAAGCCTGCAGCAAATAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10735
Forward primer (5'-3')
ACACACAATTTCGAGCTCTACAACAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACGCAAGCCTGCAGCAAATAG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 300
Approximate temperature
55°C
  
PCR data   Exp. ID 10736
Forward primer (5'-3')
ACACACAATTTCGAGCTCTACAACAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACGCAAGCCTGCAGCAAATAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 300
Approximate temperature
55°C
  
PCR data   Exp. ID 10737
Forward primer (5'-3')
ACACACAATTTCGAGCTCTACAACAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ACGCAAGCCTGCAGCAAATAG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 300
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At2g31190F.cds.txt, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text

Genomic location of C2_At2g31190  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7363 marker 7363
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