Sol Genomics Network

SGN-M7363
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	301601 (SGN) 121319 (CGN)	-	-	-
Lycopersicon Combined	Single	SGN-U229593	-	-	-
Solanum tuberosum	Single	SGN-U257558	-	-	-
Arabidopsis	Single	At2g31190 on TAIR	-	-	-

Arabidopsis COSII

PCR data Exp. ID 41258

Forward primer (5'-3')

ACACACAATTTCGAGCTCTACAACAC

Accessions and product sizes

Solanum pennellii TA56

300

Solanum lycopersicum TA209

300

Approximate temperature

55°C

Reverse primer (5'-3')

ACGCAAGCCTGCAGCAAATAG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

1.5mM

Enzymes

Other PCR data

PCR data Exp. ID 10735
Forward primer (5'-3') ACACACAATTTCGAGCTCTACAACAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGCAAGCCTGCAGCAAATAG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 300	Approximate temperature 55°C

PCR data Exp. ID 10736
Forward primer (5'-3') ACACACAATTTCGAGCTCTACAACAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGCAAGCCTGCAGCAAATAG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 300	Approximate temperature 55°C

PCR data Exp. ID 10737
Forward primer (5'-3') ACACACAATTTCGAGCTCTACAACAC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') ACGCAAGCCTGCAGCAAATAG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 300	Approximate temperature 55°C