SGN Marker C2_At2g33800

SGN-M7393
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U198907---
Lycopersicon CombinedMultipleSGN-U213116---
Solanum tuberosumSingleSGN-U244135---
ArabidopsisSingleAt2g33800 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25810)
Chromosome
2
Position
14.31 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41268
Forward primer (5'-3')
TTCGATGACGGTCCAATGGAGTC
Accessions and product sizes
Solanum pennellii TA56
2000
Solanum lycopersicum TA209
2000
Approximate temperature
55°C
Reverse primer (5'-3')
TTGCTGCTCCAAAGTCTCCCTC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10770
Forward primer (5'-3')
TTCGATGACGGTCCAATGGAGTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGCTGCTCCAAAGTCTCCCTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 300+2500
 Approximate temperature
55°C
  
PCR data   Exp. ID 10771
Forward primer (5'-3')
TTCGATGACGGTCCAATGGAGTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGCTGCTCCAAAGTCTCCCTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 300+2500
 Approximate temperature
55°C
  
PCR data   Exp. ID 10772
Forward primer (5'-3')
TTCGATGACGGTCCAATGGAGTC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TTGCTGCTCCAAAGTCTCCCTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 300+2500
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U213116
SGN-U269557
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g33800  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7393 marker 7393
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