SGN Marker C2_At2g35500

SGN-M7407
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle306442 (SGN)
126590 (CGN)
---
Lycopersicon CombinedSingleSGN-U218979---
ArabidopsisSingleAt2g35500 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25826)
Chromosome
2
Position
14.92 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41272
Forward primer (5'-3')
AGAAAATAAAACCTGCAGAGACAATATG
Accessions and product sizes
Solanum lycopersicum TA209
320
Solanum pennellii TA56
320
Approximate temperature
55°C
Reverse primer (5'-3')
TCCCAAGACTCCACAATGTCAGGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10786
Forward primer (5'-3')
AGAAAATAAAACCTGCAGAGACAATATG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCCAAGACTCCACAATGTCAGGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 180
Approximate temperature
55°C
  
PCR data   Exp. ID 10787
Forward primer (5'-3')
AGAAAATAAAACCTGCAGAGACAATATG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCCAAGACTCCACAATGTCAGGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 180
Approximate temperature
55°C
  
PCR data   Exp. ID 10788
Forward primer (5'-3')
AGAAAATAAAACCTGCAGAGACAATATG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCCCAAGACTCCACAATGTCAGGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 180
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At2g35500  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7407 marker 7407
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