Sol Genomics Network

SGN Marker C2_At2g35610

SGN-M7408
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	304883 (SGN) 124405 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U200626	-	-	-
Lycopersicon Combined	Single	SGN-U216870	-	-	-
Solanum tuberosum	Single	SGN-U245789	-	-	-
Arabidopsis	Single	At2g35610 on TAIR	-	-	-

Mapped locations

Map: Pepper-COSII
Map version 58 (location: 41387)
Chromosome 1
Position 70.30 cM
Confidence I
Protocol dCAPS

Pepper-COSII

PCR data Exp. ID 43363

Forward primer (5'-3')

TATTTCGTCCAGGGTAATTCCTCACC

Accessions and product sizes

Approximate temperature

53°C

Reverse primer (5'-3')

TTCCTTCTGTTCCAGCATATTGG

Digested band sizes (using unknown enzyme)

Mg⁺² concentration

Unknown

Enzymes

Map: Tomato-EXPEN 2000
Map version 52 (location: 38361)
Chromosome 8
Position 41.70 cM
Confidence I(LOD2)
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39614

Forward primer (5'-3')

AATCTCAAACTTGGTCTTCTCCC

Accessions and product sizes

Solanum lycopersicum TA209

550

Solanum pennellii TA56

550

Approximate temperature

55°C

Reverse primer (5'-3')

TTCCTTCTGTTCCAGCATATTGG

Digested band sizes (using amplicon difference)

Solanum lycopersicum TA209

150

Solanum pennellii TA56

200

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25827)
Chromosome 2
Position 14.96 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10789
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 350	Approximate temperature 55°C

PCR data Exp. ID 10790
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 350	Approximate temperature 55°C

PCR data Exp. ID 10791
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 350	Approximate temperature 55°C

PCR data Exp. ID 13031
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Solanum tuberosum TA3427: 320	Approximate temperature 55°C

PCR data Exp. ID 13032
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Capsicum annuum TA3428: 320	Approximate temperature 55°C

PCR data Exp. ID 13033
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 320	Approximate temperature 55°C

PCR data Exp. ID 13034
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 320	Approximate temperature 55°C

PCR data Exp. ID 13035
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 320	Approximate temperature 55°C

PCR data Exp. ID 13036
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Nicotiana plumbaginifolia TA3354: 320	Approximate temperature 55°C

PCR data Exp. ID 13037
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Physalis TA1367: 320	Approximate temperature 55°C

PCR data Exp. ID 13038
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Petunia axillaris TA3309: 320	Approximate temperature 55°C

PCR data Exp. ID 13039
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 320	Approximate temperature 55°C

PCR data Exp. ID 13040
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 320	Approximate temperature 55°C

PCR data Exp. ID 32622
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 320	Approximate temperature 55°C

PCR data Exp. ID 32946
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 320	Approximate temperature 55°C

PCR data Exp. ID 32947
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Solanum pennellii LA716: 320	Approximate temperature 55°C

PCR data Exp. ID 32948
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 320	Approximate temperature 55°C

PCR data Exp. ID 32949
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: 320	Approximate temperature 55°C

PCR data Exp. ID 32950
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: 320	Approximate temperature 55°C

PCR data Exp. ID 10792
Forward primer (5'-3') AATCTCAAACTTGGTCTTCTCCC	Digested band sizes (using MspI) Solanum pennellii LA716: 200+100 Solanum lycopersicum LA925: 350	Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCCTTCTGTTCCAGCATATTGG	Enzymes All possible enzymes for pennellii and and lycopersicum: MspI
Accessions and product sizes Solanum pennellii LA716: 350 Solanum lycopersicum LA925: 350	Approximate temperature 55°C