SGN Marker C2_At2g36230

SGN-M7414
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U204813---
Solanum tuberosumSingleSGN-U265431---
ArabidopsisSingleAt2g36230 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25834)
Chromosome
2
Position
15.20 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41274
Forward primer (5'-3')
AGCCTCATCACTACAAAGCTTATTCTG
Accessions and product sizes
Solanum pennellii TA56
450
Solanum lycopersicum TA209
450
Approximate temperature
55°C
Reverse primer (5'-3')
AGCTATGCTCAAGGGGTCAGCACC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
400
Solanum lycopersicum TA209
500
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 32272
Forward primer (5'-3')
AGCCTCATCACTACAAAGCTTATTCTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCTATGCTCAAGGGGTCAGCACC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1000
 Approximate temperature
55°C
  
PCR data   Exp. ID 32273
Forward primer (5'-3')
AGCCTCATCACTACAAAGCTTATTCTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCTATGCTCAAGGGGTCAGCACC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1000
 Approximate temperature
55°C
  
PCR data   Exp. ID 32274
Forward primer (5'-3')
AGCCTCATCACTACAAAGCTTATTCTG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGCTATGCTCAAGGGGTCAGCACC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1000
 Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g36230  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7414 marker 7414
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