SGN Marker C2_At2g37035

SGN-M7425
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle302562 (SGN)
120796 (CGN)
---
Lycopersicon CombinedSingleSGN-U240727---
ArabidopsisSingleAt2g37035 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25845)
Chromosome
2
Position
15.56 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41278
Forward primer (5'-3')
ACTCGAGGAAAAGTGGTAGGGAGG
Accessions and product sizes
Approximate temperature
Unknown
Reverse primer (5'-3')
AGGATGCATCATTATACCTTGCAGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10803
Forward primer (5'-3')
ACTCGAGGAAAAGTGGTAGGGAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGGATGCATCATTATACCTTGCAGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 250
Approximate temperature
55°C
  
PCR data   Exp. ID 10804
Forward primer (5'-3')
ACTCGAGGAAAAGTGGTAGGGAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGGATGCATCATTATACCTTGCAGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 250
Approximate temperature
55°C
  
PCR data   Exp. ID 10805
Forward primer (5'-3')
ACTCGAGGAAAAGTGGTAGGGAGG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGGATGCATCATTATACCTTGCAGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 250
Approximate temperature
55°C
  
Unigene blast matches for primers 
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Amplicon sequence alignment, FASTA
At2g37035F.cds.txt, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. pennellii TA56, AB1 chromatogram - [View]
Forward amplicon sequence for S. pennellii TA56, plain text

Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker

Genomic location of C2_At2g37035  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7425 marker 7425
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