SGN Marker C2_At2g37510

SGN-M7431
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle300818 (SGN)
120216 (CGN)		---
Lycopersicon CombinedMultipleSGN-U224032---
Solanum tuberosumSingleSGN-U249742---
ArabidopsisSingleAt2g37510 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38369)
Chromosome
10
Position
72.00 cM
Confidence
I(LOD2)
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39622
Forward primer (5'-3')
TGGCAATTATGGCATTATTTCGTCG
Accessions and product sizes
Solanum lycopersicum TA209
230
Solanum pennellii TA56
230
Approximate temperature
55°C
Reverse primer (5'-3')
AGGTTTTCATCACCAGTGTATCTTGAAAG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25851)
Chromosome
2
Position
15.75 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 10810
Forward primer (5'-3')
TGGCAATTATGGCATTATTTCGTCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGGTTTTCATCACCAGTGTATCTTGAAAG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 2000
 Approximate temperature
55°C
  
PCR data   Exp. ID 10811
Forward primer (5'-3')
TGGCAATTATGGCATTATTTCGTCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGGTTTTCATCACCAGTGTATCTTGAAAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2000
 Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g37510  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7431 marker 7431
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