SGN Marker C2_At2g38020

SGN-M7437
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle308527 (SGN)
128548 (CGN)		---
Capsicum annuumSingleSGN-U203790---
Lycopersicon CombinedSingleSGN-U224947---
Solanum tuberosumSingleSGN-U250993---
ArabidopsisSingleAt2g38020 on TAIR---
Mapped locations  
Map: Tobacco N. tomentosiformis   
Map version
91 (location: 46641)
Chromosome
7
Position
12.20 cM
Confidence
CF(LOD3)
Protocol
CAPS


Tobacco N. tomentosiformis

Map: Pepper-COSII   
Map version
58 (location: 41389)
Chromosome
7
Position
104.00 cM
Confidence
F(LOD3)
Protocol
CAPS


Pepper-COSII

PCR data   Exp. ID 43365
Forward primer (5'-3')
TGCAGCTTTGCTTTATGATGCC
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AAAGGCTTGGCCGTAGCTTGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
Unknown
   Enzymes
  

Map: Tomato-EXPEN 2000   
Map version
52 (location: 38370)
Chromosome
7
Position
49.00 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39623
Forward primer (5'-3')
TGCAGCTTTGCTTTATGATGCC
Accessions and product sizes
Solanum lycopersicum TA209
500
Solanum pennellii TA56
500
Approximate temperature
55°C
Reverse primer (5'-3')
AAAGGCTTGGCCGTAGCTTGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 25857)
Chromosome
2
Position
15.92 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 10815
Forward primer (5'-3')
TGCAGCTTTGCTTTATGATGCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AAAGGCTTGGCCGTAGCTTGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 500
 Approximate temperature
55°C
  
PCR data   Exp. ID 10816
Forward primer (5'-3')
TGCAGCTTTGCTTTATGATGCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AAAGGCTTGGCCGTAGCTTGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 500
 Approximate temperature
55°C
  
PCR data   Exp. ID 10817
Forward primer (5'-3')
TGCAGCTTTGCTTTATGATGCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AAAGGCTTGGCCGTAGCTTGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 500
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U224947
SGN-U294119
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g38020  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7437 marker 7437
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