Sol Genomics Network

SGN Marker C2_At2g38270

SGN-M7441
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

Synonyms

None

Locus associations

None

Orthologs in this COSII group

Species	Copies	Sequence ID	CDS/Edited sequence	Peptide sequence	Predicted introns
Coffee	Single	303556 (SGN) 122552 (CGN)	-	-	-
Capsicum annuum	Single	SGN-U196465	-	-	-
Lycopersicon Combined	Single	SGN-U222884	-	-	-
Solanum tuberosum	Single	SGN-U253332	-	-	-
Arabidopsis	Single	At2g38270 on TAIR	-	-	-

Mapped locations

Map: Tomato-EXPEN 2000
Map version 52 (location: 38373)
Chromosome 9
Position 0.50 cM
Confidence I
Protocol CAPS

Tomato-EXPEN 2000

PCR data Exp. ID 39625

Forward primer (5'-3')

ACGCAACATCGCCGCCAGTG

Accessions and product sizes

Solanum pennellii TA56

2000

Solanum lycopersicum TA209

2000

Approximate temperature

55°C

Reverse primer (5'-3')

TTCATTACCCGGTGGTACCTTTCC

Digested band sizes (using amplicon difference)

Solanum pennellii TA56

950

Solanum lycopersicum TA209

900

Mg⁺² concentration

1.5mM

Enzymes

Map: Arabidopsis COSII
Map version 44 (location: 25862)
Chromosome 2
Position 16.04 MB
Confidence uncalculated
Protocol CAPS

Arabidopsis COSII

Other PCR data

PCR data Exp. ID 10822
Forward primer (5'-3') ACGCAACATCGCCGCCAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCATTACCCGGTGGTACCTTTCC	Enzymes
Accessions and product sizes Solanum pennellii LA716: 2000	Approximate temperature 55°C

PCR data Exp. ID 10823
Forward primer (5'-3') ACGCAACATCGCCGCCAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCATTACCCGGTGGTACCTTTCC	Enzymes
Accessions and product sizes Solanum lycopersicum LA925: 2000	Approximate temperature 55°C

PCR data Exp. ID 10824
Forward primer (5'-3') ACGCAACATCGCCGCCAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCATTACCCGGTGGTACCTTTCC	Enzymes
Accessions and product sizes Solanum pimpinellifolium LA1589: 2000	Approximate temperature 55°C

PCR data Exp. ID 13056
Forward primer (5'-3') ACGCAACATCGCCGCCAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCATTACCCGGTGGTACCTTTCC	Enzymes
Accessions and product sizes Solanum melongena TA2986: 2000	Approximate temperature 55°C

PCR data Exp. ID 13057
Forward primer (5'-3') ACGCAACATCGCCGCCAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCATTACCCGGTGGTACCTTTCC	Enzymes
Accessions and product sizes Capsicum annuum TA3428: Multiple	Approximate temperature 55°C

PCR data Exp. ID 13058
Forward primer (5'-3') ACGCAACATCGCCGCCAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCATTACCCGGTGGTACCTTTCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 500	Approximate temperature 55°C

PCR data Exp. ID 13059
Forward primer (5'-3') ACGCAACATCGCCGCCAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCATTACCCGGTGGTACCTTTCC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: Multiple	Approximate temperature 55°C

PCR data Exp. ID 13060
Forward primer (5'-3') ACGCAACATCGCCGCCAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCATTACCCGGTGGTACCTTTCC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: Multiple	Approximate temperature 55°C

PCR data Exp. ID 13061
Forward primer (5'-3') ACGCAACATCGCCGCCAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCATTACCCGGTGGTACCTTTCC	Enzymes
Accessions and product sizes Petunia axillaris subsp. parodii TA3310: 350+500	Approximate temperature 55°C

PCR data Exp. ID 13062
Forward primer (5'-3') ACGCAACATCGCCGCCAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCATTACCCGGTGGTACCTTTCC	Enzymes
Accessions and product sizes Petunia x hybrida TA3311: 350	Approximate temperature 55°C

PCR data Exp. ID 13063
Forward primer (5'-3') ACGCAACATCGCCGCCAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCATTACCCGGTGGTACCTTTCC	Enzymes
Accessions and product sizes Petunia integrifolia TA3312: 2000	Approximate temperature 55°C

PCR data Exp. ID 13064
Forward primer (5'-3') ACGCAACATCGCCGCCAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCATTACCCGGTGGTACCTTTCC	Enzymes
Accessions and product sizes Coffea canephora BP409: 1200	Approximate temperature 55°C

PCR data Exp. ID 32957
Forward primer (5'-3') ACGCAACATCGCCGCCAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCATTACCCGGTGGTACCTTTCC	Enzymes
Accessions and product sizes Nicotiana sylvestris TA3346: 500	Approximate temperature 55°C

PCR data Exp. ID 32958
Forward primer (5'-3') ACGCAACATCGCCGCCAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCATTACCCGGTGGTACCTTTCC	Enzymes
Accessions and product sizes Nicotiana tomentosiformis TA3349: Multiple	Approximate temperature 55°C

PCR data Exp. ID 32959
Forward primer (5'-3') ACGCAACATCGCCGCCAGTG		Mg⁺² concentration 1.5mM
Reverse primer (5'-3') TTCATTACCCGGTGGTACCTTTCC	Enzymes
Accessions and product sizes Nicotiana otophora TA3350: Multiple	Approximate temperature 55°C