SGN Marker C2_At2g38320

SGN-M7443
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U199938---
Solanum tuberosumSingleSGN-U252504---
ArabidopsisSingleAt2g38320 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25864)
Chromosome
2
Position
16.06 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41283
Forward primer (5'-3')
TCTCGCCCTCTTTATAACGGGAC
Accessions and product sizes
Solanum pennellii TA56
350
Solanum lycopersicum TA209
350
Approximate temperature
55°C
Reverse primer (5'-3')
ATATGCAGACCATTGAAACCCATTG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 32287
Forward primer (5'-3')
TCTCGCCCTCTTTATAACGGGAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATATGCAGACCATTGAAACCCATTG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 300
Approximate temperature
55°C
  
PCR data   Exp. ID 32288
Forward primer (5'-3')
TCTCGCCCTCTTTATAACGGGAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATATGCAGACCATTGAAACCCATTG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 300
Approximate temperature
55°C
  
PCR data   Exp. ID 32289
Forward primer (5'-3')
TCTCGCCCTCTTTATAACGGGAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATATGCAGACCATTGAAACCCATTG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 300
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At2g38320  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7443 marker 7443
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