SGN Marker C2_At2g39050

SGN-M7455
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle299562 (SGN)
122265 (CGN)
---
Capsicum annuumSingleSGN-U200264---
Lycopersicon CombinedSingleSGN-U216358---
Solanum tuberosumSingleSGN-U248086---
ArabidopsisSingleAt2g39050 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25877)
Chromosome
2
Position
16.31 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41289
Forward primer (5'-3')
ACGGTCACCACCACCACCACCAC
Accessions and product sizes
Solanum lycopersicum TA209
230
Solanum pennellii TA56
230
Approximate temperature
55°C
Reverse primer (5'-3')
TGAGAGGCGCCAATAGAGTGCTTC
Digested band sizes (using amplicon difference)
Solanum pennellii TA56
90+140
Solanum lycopersicum TA209
230
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10832
Forward primer (5'-3')
ACGGTCACCACCACCACCACCAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGAGAGGCGCCAATAGAGTGCTTC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: Multiple
Approximate temperature
55°C
  
PCR data   Exp. ID 10833
Forward primer (5'-3')
ACGGTCACCACCACCACCACCAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGAGAGGCGCCAATAGAGTGCTTC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: Multiple
Approximate temperature
55°C
  
PCR data   Exp. ID 10834
Forward primer (5'-3')
ACGGTCACCACCACCACCACCAC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGAGAGGCGCCAATAGAGTGCTTC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 430+750
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At2g39050  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7455 marker 7455
User comments 
Please wait, checking for comments. (If comments do not show up, access them here)