SGN Marker C2_At2g40980

SGN-M7478
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle309866 (SGN)
128079 (CGN)
---
Lycopersicon CombinedSingleSGN-U239947---
Solanum tuberosumSingleSGN-U254443---
ArabidopsisSingleAt2g40980 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25901)
Chromosome
2
Position
17.11 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41299
Forward primer (5'-3')
ACCCTGGTCAGTGTAGGAGACCAAG
Accessions and product sizes
Solanum lycopersicum TA209
300
Solanum pennellii TA56
300
Approximate temperature
55°C
Reverse primer (5'-3')
ATCTGCGAATGCTTTCAAGACAGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 32308
Forward primer (5'-3')
ACCCTGGTCAGTGTAGGAGACCAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATCTGCGAATGCTTTCAAGACAGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 520
Approximate temperature
55°C
  
PCR data   Exp. ID 32309
Forward primer (5'-3')
ACCCTGGTCAGTGTAGGAGACCAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATCTGCGAATGCTTTCAAGACAGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 520
Approximate temperature
55°C
  
PCR data   Exp. ID 32310
Forward primer (5'-3')
ACCCTGGTCAGTGTAGGAGACCAAG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
ATCTGCGAATGCTTTCAAGACAGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 520
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At2g40980  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7478 marker 7478
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