SGN Marker C2_At2g44310

SGN-M7514
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle302887 (SGN)
121680 (CGN)
---
Capsicum annuumSingleSGN-U200248---
Lycopersicon CombinedSingleSGN-U230664---
Solanum tuberosumSingleSGN-U267425---
ArabidopsisSingleAt2g44310 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25938)
Chromosome
2
Position
18.32 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41305
Forward primer (5'-3')
TGGACCTCAATAACGACGGCG
Accessions and product sizes
Approximate temperature
55°C
Reverse primer (5'-3')
AAGCTTAGAAGCTTCGAGATCAGC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 32311
Forward primer (5'-3')
TGGACCTCAATAACGACGGCG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
AAGCTTAGAAGCTTCGAGATCAGC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 320
Approximate temperature
53°C
  
PCR data   Exp. ID 32312
Forward primer (5'-3')
TGGACCTCAATAACGACGGCG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
AAGCTTAGAAGCTTCGAGATCAGC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 320
Approximate temperature
53°C
  
PCR data   Exp. ID 32313
Forward primer (5'-3')
TGGACCTCAATAACGACGGCG
 
 
Mg+2 concentration
3mM
Reverse primer (5'-3')
AAGCTTAGAAGCTTCGAGATCAGC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 320
Approximate temperature
53°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

BLASTX result of original unigene sequences against Arabidopsis protein database

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]

Genomic location of C2_At2g44310  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7514 marker 7514
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