SGN Marker C2_At2g46220

SGN-M7542
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle299889 (SGN)
121658 (CGN)		---
Capsicum annuumSingleSGN-U204673---
Lycopersicon CombinedSingleSGN-U220578---
Solanum tuberosumMultipleSGN-U254143---
ArabidopsisSingleAt2g46220 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25966)
Chromosome
2
Position
18.99 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41315
Forward primer (5'-3')
TCTGAATACCGGTTCTGCTATTCG
Accessions and product sizes
Solanum pennellii TA56
650
Solanum lycopersicum TA209
650
Approximate temperature
55°C
Reverse primer (5'-3')
TGCCTTCCACAGGCTGCCATACAC
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10883
Forward primer (5'-3')
TCTGAATACCGGTTCTGCTATTCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCCTTCCACAGGCTGCCATACAC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 650
 Approximate temperature
55°C
  
PCR data   Exp. ID 10884
Forward primer (5'-3')
TCTGAATACCGGTTCTGCTATTCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCCTTCCACAGGCTGCCATACAC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 650
 Approximate temperature
55°C
  
PCR data   Exp. ID 10885
Forward primer (5'-3')
TCTGAATACCGGTTCTGCTATTCG
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCCTTCCACAGGCTGCCATACAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 660
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U220578
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Forward amplicon sequence for S. lycopersicum TA209, AB1 chromatogram - [View]
Forward amplicon sequence for S. lycopersicum TA209, plain text
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g46220  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7542 marker 7542
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