SGN Marker C2_At2g46910

SGN-M7552
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle309019 (SGN)
129915 (CGN)		---
Capsicum annuumMultipleSGN-U197921---
Lycopersicon CombinedSingleSGN-U220486---
Solanum tuberosumSingleSGN-U247951---
ArabidopsisSingleAt2g46910 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 25976)
Chromosome
2
Position
19.28 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 10899
Forward primer (5'-3')
TGGTTGTGGTTGAAGGTTTTGATGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AAGCCTAGCAGCAGATTCAAAAAG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 150
 Approximate temperature
55°C
  
PCR data   Exp. ID 10900
Forward primer (5'-3')
TGGTTGTGGTTGAAGGTTTTGATGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AAGCCTAGCAGCAGATTCAAAAAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 150
 Approximate temperature
55°C
  
PCR data   Exp. ID 10901
Forward primer (5'-3')
TGGTTGTGGTTGAAGGTTTTGATGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AAGCCTAGCAGCAGATTCAAAAAG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 150
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U220486
SGN-U272491
SGN-U272492
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
BLASTX result of original unigene sequences against Arabidopsis protein database
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Input file for PAUP, NEXUS format
Phylogenetic tree
Phylogenetic tree   |   [View]
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At2g46910  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7552 marker 7552
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