SGN Marker C2_At3g01440

SGN-M7578
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle312035 (SGN)
125494 (CGN)		---
Lycopersicon CombinedSingleSGN-U230677---
ArabidopsisSingleAt3g01440 on TAIR---
Mapped locations  
Map: Tomato-EXPEN 2000   
Map version
52 (location: 38413)
Chromosome
10
Position
3.10 cM
Confidence
I
Protocol
CAPS


Tomato-EXPEN 2000

PCR data   Exp. ID 39658
Forward primer (5'-3')
ACAACAAATTTAAACATTATATTTGAAGC
Accessions and product sizes
Solanum pennellii TA56
450
Solanum lycopersicum TA209
450
Approximate temperature
55°C
Reverse primer (5'-3')
TCAAATAATCGATTAGCAAGATCAGTGAG
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
300
Solanum pennellii TA56
450
Mg+2 concentration
1.5mM
   Enzymes
  

Map: Arabidopsis COSII   
Map version
44 (location: 26002)
Chromosome
3
Position
0.17 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII
Other PCR data 
PCR data   Exp. ID 32319
Forward primer (5'-3')
ACAACAAATTTAAACATTATATTTGAAGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCAAATAATCGATTAGCAAGATCAGTGAG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1200
 Approximate temperature
55°C
  
PCR data   Exp. ID 32320
Forward primer (5'-3')
ACAACAAATTTAAACATTATATTTGAAGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCAAATAATCGATTAGCAAGATCAGTGAG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 1200
 Approximate temperature
55°C
  
PCR data   Exp. ID 32321
Forward primer (5'-3')
ACAACAAATTTAAACATTATATTTGAAGC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCAAATAATCGATTAGCAAGATCAGTGAG
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 1200
 Approximate temperature
55°C
  
PCR data   Exp. ID 32322
Forward primer (5'-3')
ACAACAAATTTAAACATTATATTTGAAGC
Digested band sizes (using HinfI)
Solanum pennellii LA716: 325+200
Solanum lycopersicum LA925: 650+200+175
 Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TCAAATAATCGATTAGCAAGATCAGTGAG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 1200
Solanum lycopersicum LA925: 1200
 Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At3g01440  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7578 marker 7578
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