SGN Marker C2_At3g01910

SGN-M7585
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
Capsicum annuumSingleSGN-U200858---
Lycopersicon CombinedMultipleSGN-U215342---
Solanum tuberosumSingleSGN-U244739---
ArabidopsisSingleAt3g01910 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26009)
Chromosome
3
Position
0.32 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41322
Forward primer (5'-3')
AGCTCTGATTTCATCTTATGTCACTCC
Accessions and product sizes
Solanum lycopersicum TA209
1200
Solanum pennellii TA56
1200
Approximate temperature
55°C
Reverse primer (5'-3')
AGTCTTTGGAATTTTTTATAAGACCAC
Digested band sizes (using amplicon difference)
Solanum lycopersicum TA209
410+430
Solanum pennellii TA56
390+410
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 10920
Forward primer (5'-3')
AGCTCTGATTTCATCTTATGTCACTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGTCTTTGGAATTTTTTATAAGACCAC
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 220
 Approximate temperature
55°C
  
PCR data   Exp. ID 10921
Forward primer (5'-3')
AGCTCTGATTTCATCTTATGTCACTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGTCTTTGGAATTTTTTATAAGACCAC
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 220
 Approximate temperature
55°C
  
PCR data   Exp. ID 10922
Forward primer (5'-3')
AGCTCTGATTTCATCTTATGTCACTCC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
AGTCTTTGGAATTTTTTATAAGACCAC
Enzymes
  
Accessions and product sizes
Solanum pimpinellifolium LA1589: 220
 Approximate temperature
55°C
  
Unigene blast matches for primers 
SGN-U215342
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA
Related Markers  

Related Genotyped Markers: These markers have been genotyped and share a name with this marker
Genomic location of C2_At3g01910  
 %2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7585 marker 7585
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