SGN Marker C2_At3g04470

SGN-M7611
COSII markers are Conserved Ortholog Set II - orthologs between many asterid species

SynonymsNone
Locus associationsNone
Orthologs in this COSII group 
SpeciesCopiesSequence IDCDS/Edited sequencePeptide sequencePredicted introns
CoffeeSingle302929 (SGN)
123912 (CGN)
---
Solanum tuberosumSingleSGN-U258090---
ArabidopsisSingleAt3g04470 on TAIR---
Mapped locations  
Map: Arabidopsis COSII   
Map version
44 (location: 26035)
Chromosome
3
Position
1.19 MB
Confidence
uncalculated
Protocol
CAPS


Arabidopsis COSII

PCR data   Exp. ID 41334
Forward primer (5'-3')
AGGGAGCTTTTAACTACGAAATTACC
Accessions and product sizes
Solanum lycopersicum TA209
1000
Solanum pennellii TA56
1400
Approximate temperature
55°C
Reverse primer (5'-3')
TGCTTCTTGTTCCTAGCTTTCTTGG
Digested band sizes (using unknown enzyme)
Mg+2 concentration
1.5mM
   Enzymes
  
Other PCR data 
PCR data   Exp. ID 32338
Forward primer (5'-3')
AGGGAGCTTTTAACTACGAAATTACC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCTTCTTGTTCCTAGCTTTCTTGG
Enzymes
  
Accessions and product sizes
Solanum pennellii LA716: 2100
Approximate temperature
55°C
  
PCR data   Exp. ID 32339
Forward primer (5'-3')
AGGGAGCTTTTAACTACGAAATTACC
 
 
Mg+2 concentration
1.5mM
Reverse primer (5'-3')
TGCTTCTTGTTCCTAGCTTTCTTGG
Enzymes
  
Accessions and product sizes
Solanum lycopersicum LA925: 2100
Approximate temperature
55°C
  
Universal primers for Asterid species 
No additional PCR data found.
Other COSII sequence data 

Alignment of Arabidopsis CDS and edited Asterid unigenes, FASTA
Alignment of DNA and translated peptides from Arabidopsis CDS and edited Asterid unigenes, plain text
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, ClustalW
Alignment of translated peptides from Arabidopsis CDS and edited Asterid unigenes, FASTA

Genomic location of C2_At3g04470  
%2Fsearch%2Fmarkers%2Fmarkerinfo.pl%3Fmarker_id%3D7611 marker 7611
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